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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttacttaacactgcaacctagggtttcgatttcatgtaatctatatagtgtttttgggaatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTCACTGCGCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACA

Basic information

species Glycine max
transcript GLYMA19G36750.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5820359|gb|AI988565.1|AI988565
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGATGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|193721220|gb|FK656584.1|FK656584
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGTTGCCCCT
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCC-T
EST: gi|192323324|gb|FK018975.1|FK018975
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|58020811|gb|CX707553.1|CX707553
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|193387761|gb|FK350532.1|FK350532
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTG
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTG
EST: gi|193358042|gb|FK319670.1|FK319670
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|151393490|gb|EV263365.1|EV263365
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATCGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|209723615|gb|BW662537.1|BW662537
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|151405875|gb|EV275690.1|EV275690
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|15287819|gb|BI471710.1|BI471710
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|254329575|gb|GR839128.1|GR839128
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|151399478|gb|EV269349.1|EV269349
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|214004413|gb|DB985554.1|DB985554
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|13477412|gb|BG507300.1|BG507300
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|192318459|gb|FK006579.1|FK006579
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|192304729|gb|FG994979.1|FG994979
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|254329576|gb|GR839129.1|GR839129
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|193442973|gb|FK407865.1|FK407865
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGG
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGG
EST: gi|151405431|gb|EV275245.1|EV275245
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|254339808|gb|GR857933.1|GR857933
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|192318460|gb|FK006580.1|FK006580
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|298195463|gb|HO043854.1|HO043854
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|209723616|gb|BW662538.1|BW662538
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|193329412|gb|FK296566.1|FK296566
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTT-GTTTT-GGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|22932209|gb|BU549348.1|BU549348
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|193590823|gb|FK548168.1|FK548168
EST:     TTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: TTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|151401660|gb|EV271473.1|EV271473
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: gi|192330124|gb|FK019779.1|FK019779
EST:     GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC                         GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacctagggtttcgatttcatgtaatctatatagtgtttttgggaatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTCACTGCGCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACA
                    atgtaatctatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttacttaacactgcaacctagggtttcgatttcatgtaatctatatagtgtttttgggaatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTCACTGCGCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA