Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGGAAGACAAAGAAGTTTAAATAAATGGGTCTAGCTTTAATCGTCGGACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaaaactgtttctcatatacaccggtattttgcttttcatcgcacgtttcagcgttagggctcatggatctgatttttgttgcag

Basic information

species Glycine max
transcript GLYMA19G36750.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5820359|gb|AI988565.1|AI988565
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|193721220|gb|FK656584.1|FK656584
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|192323324|gb|FK018975.1|FK018975
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|58020811|gb|CX707553.1|CX707553
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|193387761|gb|FK350532.1|FK350532
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|193358042|gb|FK319670.1|FK319670
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|151393490|gb|EV263365.1|EV263365
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|209723615|gb|BW662537.1|BW662537
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|151405875|gb|EV275690.1|EV275690
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|15287819|gb|BI471710.1|BI471710
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|254329575|gb|GR839128.1|GR839128
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|151399478|gb|EV269349.1|EV269349
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|214004413|gb|DB985554.1|DB985554
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|13477412|gb|BG507300.1|BG507300
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|192318459|gb|FK006579.1|FK006579
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|192304729|gb|FG994979.1|FG994979
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|254329576|gb|GR839129.1|GR839129
EST:     CTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: CTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|193442973|gb|FK407865.1|FK407865
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|151405431|gb|EV275245.1|EV275245
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|254339808|gb|GR857933.1|GR857933
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|192318460|gb|FK006580.1|FK006580
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|298195463|gb|HO043854.1|HO043854
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|209723616|gb|BW662538.1|BW662538
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|193329412|gb|FK296566.1|FK296566
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|22932209|gb|BU549348.1|BU549348
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|151401660|gb|EV271473.1|EV271473
EST:     ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: gi|192330124|gb|FK019779.1|FK019779
EST:     CGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT                         ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: CGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCGGAAGACAAAGAAGTTTAAATAAATGGGTCTAGCTTTAATCGTCGGACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaaaactgtttctcatatacaccggtattttgcttttcatcgcacgtttcagcgttagggctcatggatctgatttttgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC