1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaccctaaaaactgtttctcatatacaccggtattttgcttttcatcgcacgtttcagcgttagggctcatggatctgatttttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC
species | Glycine max |
transcript | GLYMA19G36750.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|193721220|gb|FK656584.1|FK656584
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|192323324|gb|FK018975.1|FK018975
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|58020811|gb|CX707553.1|CX707553
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|193387761|gb|FK350532.1|FK350532
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|193358042|gb|FK319670.1|FK319670
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|151393490|gb|EV263365.1|EV263365
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|209723615|gb|BW662537.1|BW662537
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|151405875|gb|EV275690.1|EV275690
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|15287819|gb|BI471710.1|BI471710
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|254329575|gb|GR839128.1|GR839128
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|151399478|gb|EV269349.1|EV269349
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|214004413|gb|DB985554.1|DB985554
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|13477412|gb|BG507300.1|BG507300
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|192318459|gb|FK006579.1|FK006579
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|192304729|gb|FG994979.1|FG994979
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|254329576|gb|GR839129.1|GR839129
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: CTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|193442973|gb|FK407865.1|FK407865
genomic: CTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|151405431|gb|EV275245.1|EV275245
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|254339808|gb|GR857933.1|GR857933
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|192318460|gb|FK006580.1|FK006580
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|298195463|gb|HO043854.1|HO043854
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|209723616|gb|BW662538.1|BW662538
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|193329412|gb|FK296566.1|FK296566
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|22932209|gb|BU549348.1|BU549348
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|151401660|gb|EV271473.1|EV271473
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGEST: gi|192330124|gb|FK019779.1|FK019779
genomic: ACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
EST: CGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGT ATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
genomic: CGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTgtaccctaaa ... tttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCG
tgcttttcatcgcacgtttcagcgttagggctcatggatctgatttttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC
atctgat putative branch site (score: 4)
tttttgtt CT-rich tract
atttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccctaaaaactgtttctcatatacaccggtattttgcttttcatcgcacgtttcagcgttagggctcatggatctgatttttgttgcagATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA