Sequence
atgc intronic sequence ATGC exonic sequenceAGTAATCCTATAGCGAGATGGCATATATGCCAGGGTTCAATTAATAGTATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATGgtatattcttaatccaattccatcctcactatgtattatatctacttattttcatattctttcaaagataacatctgaaattattttacttactgcatccag
Basic information
species | Glycine max |
transcript | GLYMA19G36480.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36480.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g07450.2 (Oryza sativa), 5'ss of exon 7
AGTAATCCTATAGCGAGATGGCATATATGCCAGGGTTCAATTAATAGTATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATGgtatattcttaatcc-aattcca------tcctcactatgtattatatctacttattttcatattctttcaaagataacatctgaaattattttacttactgcatccag
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AGCAACCCAATTGCTAGATGGCATGTTTGCCAAGGTTCAATCAACGCCATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctttgtcccaatagtagatggttctttattccttatagaacccactgattctgtattgcttattaaaataacactataaa--accttatttag---------
upper sequence: GLYMA19G36480.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 7
AGTAATCCTATAGCGAGATGGCATATATGCCAGGGTTCAATTAATAGTATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATGgtatattcttaatccaattccatcctcactatgtattatatctacttattttcatattctttcaaagataacatctgaaattattttacttactgcatccag
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AGTAATCCTGTTGCGAGATGGCATATATGTCAAGGTTCAATTAACAGCATTGCATTCTCAAATGATGGGGCACACTTGGCAACTGTTGGAAGAGATGgtaag------atgcg--tctattat-gtcgtgtgttctttttctttctctatgtatttctttactaa--gcagt--aaacttttttaccattcacag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254322356|gb|GR837770.1|GR837770EST: TATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATG GTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGA
genomic: TATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATGgtatattctt ... ctgcatccagGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTAATCCTATAGCGAGATGGCATATATGCCAGGGTTCAATTAATAGTATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATGgtatattcttaatccaattccatcctcactatgtattatatctacttattttcatattctttcaaagataacatctgaaattattttacttactgcatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG