Sequence
atgc intronic sequence ATGC exonic sequencegtatattcttaatccaattccatcctcactatgtattatatctacttattttcatattctttcaaagataacatctgaaattattttacttactgcatccagGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAG
Basic information
species | Glycine max |
transcript | GLYMA19G36480.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36480.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os11g07480.1 (Oryza sativa), 3'ss of exon 7
gtatattcttaatccaattccatcctcactatgtattatatctacttattttcatattctttcaaagataacatc--tgaaattattttacttact-gcatccagGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAG
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--gtaatttctgtccaa----aaacccaatattcaagatttttgcaaatgaaaggttccccgcgttcatagcaacattgtactaacgttgttcaatcatatccagGTTATTTACGAGTGTTTGACTTTGCAAAGGAGCAACTAATATTTGGTGGGAAAAGTTATTTTGGGGCTCTATTGTGTTGCTCTTGGAG
upper sequence: GLYMA19G36480.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os12g07450.2 (Oryza sativa), 3'ss of exon 7
gtatattcttaatcc-aattcca------tcctcactatgtattatatctacttattttcatattctttcaaagataacatctgaaattattttacttactgcatccagGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAG
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gtacttcctttgtcccaatagtagatggttctttattccttatagaacccactgattctgtattgcttattaaaataacactataaa-----------accttatttagGTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGAAAAGTTATTATGGTGCACTATTGTGTTGCACATGGAG
upper sequence: GLYMA19G36480.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM5G828139_T01 (Zea mays), 3'ss of exon 4
gtatatt-cttaatccaatt-ccatcctcacta--tgtattatatctacttattttcatattctttcaaagataacatctgaaattattttacttactgcatccagGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAG
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gtaaatttctctgcccaagaatgagaatcgacagctttgtgaggtttagctgctggaaaagttct----atattgca-ctaaaacaaccttatct----tatgcagGTTATTTAAGAGTATTTGACTTCACGAAAGAACAACTAATATTTGGTGGGAAAAGTTACTATGGTGCACTGTTGTGTTGCTCTTGGAG
upper sequence: GLYMA19G36480.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatattcttaatccaattccatcctcactatgtattatatctacttattttcatattctttcaaagataacatctgaaattattttacttactgcatccagGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAG
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gtatgatgg-gtttttgttttattgccggctccaattcttcctctctctatatatatctttc---agttgagaattcattttctctt-ttgaccatgtacagGTTATCTTCGAATTTTTGATTTTTCAACCCAAAAGCTAGTGTGTGGTGTAAAAAGTTATTATGGTGCTCTATTGTGTTGTGCTTGGAG
upper sequence: GLYMA19G36480.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 3'ss of exon 7
gtatattcttaatccaattccatcctcactatgtattatatctacttattttcatattctttcaaagataacatc--tgaaattattttacttactgcatccagGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAG
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gtat-ttcttgatt---ttgcattttggggttgt------cctgctt-ttttggtttgtacatgtaaatagcattgattaactgagatcaattgctgaatgcagGTTATCTGAGAGTGTTTGACTTCTCAAGAGAACAACTTATATGTGGTGGCAAAAGCTATTATGGTGCTCTATTATGTTGTGCTTGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254322356|gb|GR837770.1|GR837770EST: TATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATG GTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGA
genomic: TATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATGgtatattctt ... ctgcatccagGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttcatattctttcaaagataacatctgaaattattttacttactgcatccagGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAG
tacttac putative branch site (score: 1)
ataacatctgaaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatattcttaatccaattccatcctcactatgtattatatctacttattttcatattctttcaaagataacatctgaaattattttacttactgcatccagGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG