1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagttgtgtgttaattttttgtcatgtgcttgtagcaaactttgctaccacaggactgatgtagtttgtgtcaaatgctgtgatcagGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAG
species | Glycine max |
transcript | GLYMA19G36480.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGG GTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACEST: gi|11274110|gb|BF324478.1|BF324478
genomic: GCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGGgtaagttgtg ... ctgtgatcagGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGAC
EST: ATAACTCATGG GTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACEST: gi|17024042|gb|BM095076.1|BM095076
genomic: ATAACTCATGGgtaagttgtg ... ctgtgatcagGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGAC
EST: GCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGG GTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGAC
genomic: GCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGGgtaagttgtg ... ctgtgatcagGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGAC
tagcaaactttgctaccacaggactgatgtagtttgtgtcaaatgctgtgatcagGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAG
gactgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtgtgttaattttttgtcatgtgcttgtagcaaactttgctaccacaggactgatgtagtttgtgtcaaatgctgtgatcagGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA