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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtcaatcatcaagagagaaacttattttatggttcatttatgatgatctttcttatgatgagttaagtagatttttacctttttctttcttatttcagAACAAAGATGGCGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAGTTTTCGGTTGCCCATGCACGTTACAGTAAG

Basic information

species Glycine max
transcript GLYMA19G36480.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36480.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 3'ss of exon 5
----gtgtcaatcatcaagagagaaacttattttatggttcatttatgatgatctttcttatgatgagttaagtagatttttacctttttctttcttatttcagAACAAAGATGGCGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAGTTTTCGGTTGCCCATGCACGTTACAGTAAG
    |  ||||  | ||  ||| | | |  |  | |      ||||  ||  |  |||  || ||    |||   || |      | |       || ||  ||| |||||| || || |||||||| || || || ||| | |||||||||||||| ||||| ||||| ||||| ||||| ||||||
gcaagcctcaaata-cagtagaaatattgttcatttcagctgtttaacattcttattcc-attattctataaactgactggagtgtgtaatcaattttttctagAGCAAAGAAGGTGCAGGTGATTCATCATTTCCTGTTATCAAGGATCAAACTCAATTTTCTGTTGCACATGCGCGTTATAGTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatctttcttatgatgagttaagtagatttttacctttttctttcttatttcagAACAAAGATGGCGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAGTTTTCGGTTGCCCATGCACGTTACAGTAAG
                            tttttacctttttctt  CT-rich tract
                                    tttttctttcttattt  TA-rich tract