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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAAGATGGCGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAGTTTTCGGTTGCCCATGCACGTTACAGTAAGgtaatgaatttgatgtccttttgatttcttgacaacttattgatattctacttctattttatctttttctttcctttagcctatctattttaattttatt...

Basic information

species Glycine max
transcript GLYMA19G36480.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36480.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 6
AACAAAGATGGCGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAGTTTTCGGTTGCCCATGCACGTTACAGTAAGgtaatgaatttgatgtccttttgatttcttgacaacttattgatattctacttctattttatctttttctttcctttagcctatctattttaattttatt----
| |||||| || || |||||||| || || || ||| | |||||||||||||| ||||| ||||| ||||| ||||| |||||||||      |||||    |||| |||| |   |||   |||     | | ||| | || ||| |  |  |      | |  | | | ||| ||| |  |     
AGCAAAGAAGGTGCAGGTGATTCATCATTTCCTGTTATCAAGGATCAAACTCAATTTTCTGTTGCACATGCGCGTTATAGTAAGgtacaagtgttgat----ttttaatttttcatcaaaccattttatatgtgcttttgttatatgtaataatgcaaacttgtttctttctttgaatatggtacttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322356|gb|GR837770.1|GR837770
EST:     TTGTAAAGGATCAAACTCAGTTTTCGGTTGCCCATGCACGTTACAGTAAG                         AGTAATCCTATAGCGAGATGGCATATATGCCAGGGTTCAATTAATAGTATT
genomic: TTGTAAAGGATCAAACTCAGTTTTCGGTTGCCCATGCACGTTACAGTAAGgtaatgaatt ... gtctttgcagAGTAATCCTATAGCGAGATGGCATATATGCCAGGGTTCAATTAATAGTATT