1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtacacttttgattggtatttagtgtgtgattgattactgagcaatttgcttatctgtcttgagatcattttgctaatacaaatgttccttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATAAACCAACTTACACACCTAATCGTGATGATGGGGATATGTGCATTGTTC
species | Glycine max |
transcript | GLYMA19G36450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|298172559|gb|HO019599.1|HO019599
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGAAAAGGATEST: gi|31458202|gb|CD400230.1|CD400230
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|12774591|gb|BG239518.1|BG239518
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAEST: gi|16997184|gb|BM086556.1|BM086556
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAA
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|7286003|gb|AW598490.1|AW598490
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|11274196|gb|BF324564.1|BF324564
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|208233303|gb|GE031926.1|GE031926
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: TTCGATGGAGGGTTTTTGATGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|151406922|gb|EV276737.1|EV276737
genomic: TTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|6502133|gb|AW203506.1|AW203506
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|298175327|gb|HO015986.1|HO015986
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAGGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|192300730|gb|FG991112.1|FG991112
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
atttgcttatctgtcttgagatcattttgctaatacaaatgttccttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATAAACCAACTTACACACCTAATCGTGATGATGGGGATATGTGCATTGTTC
tgctaat putative branch site (score: 2)
tgttcctttt putative PPT
ttttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtacacttttgattggtatttagtgtgtgattgattactgagcaatttgcttatctgtcttgagatcattttgctaatacaaatgttccttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATAAACCAACTTACACACCTAATCGTGATGATGGGGATATGTGCATTGTTC
tgtacac
- - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - tactgag