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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcttctcttttcattcgacacttgctctctttctccctgtctcatattactttctatcccttttcaatctcactattttatactgttggtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG

Basic information

species Glycine max
transcript GLYMA19G36450.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298172559|gb|HO019599.1|HO019599
EST:     TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
EST: gi|31458202|gb|CD400230.1|CD400230
EST:     TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGC-TTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
EST: gi|12774591|gb|BG239518.1|BG239518
EST:     TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
EST: gi|16997184|gb|BM086556.1|BM086556
EST:     TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
EST: gi|192333032|gb|FK024681.1|FK024681
EST:     TCGTGAAATCGTACGATCTTACCAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATT
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATT
EST: gi|7286003|gb|AW598490.1|AW598490
EST:     TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
EST: gi|11274196|gb|BF324564.1|BF324564
EST:     TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
EST: gi|151406922|gb|EV276737.1|EV276737
EST:     TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
EST: gi|6502133|gb|AW203506.1|AW203506
EST:     TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
EST: gi|298175327|gb|HO015986.1|HO015986
EST:     TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
EST: gi|192300730|gb|FG991112.1|FG991112
EST:     TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATG                         AGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG
genomic: TCGTGAAATCGTACGATCTTACGAGTCAGATCGCGGTTTTGAGTACCATGgtcttacctc ... gtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattactttctatcccttttcaatctcactattttatactgttggtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG
                       atctcac  putative branch site (score: 3)
                              tattttatactgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catcttctcttttcattcgacacttgctctctttctccctgtctcatattactttctatcccttttcaatctcactattttatactgttggtgaatccagAGGTGAAAGCTTTGTTTTTTGAATTGTGAGGAAGATTGACCAAATAAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
catcttc
- - - - - -ttcattc
- - - - - - - - - - cacttgc
- - - - - - - - - - - - - - - - ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgttg