Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaaattttcaagaacctgtgtagttaggtatttaggttatatggatatgcatagggtttgtgaaaagggacccgcctcccccaatggttagataagcctgagtaatatatgctatattgctatatgctaaaactgcataattttttgtattcaattttcacatttatttttactgtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG

Basic information

species Glycine max
transcript GLYMA19G36450.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395057|gb|EV264928.1|EV264928
EST:     AAACAGAGGCGAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
EST: gi|298172559|gb|HO019599.1|HO019599
EST:     AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
EST: gi|31458202|gb|CD400230.1|CD400230
EST:     AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
EST: gi|12774591|gb|BG239518.1|BG239518
EST:     AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
EST: gi|16997184|gb|BM086556.1|BM086556
EST:     AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
EST: gi|7286003|gb|AW598490.1|AW598490
EST:     AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
EST: gi|11274196|gb|BF324564.1|BF324564
EST:     AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
EST: gi|151406922|gb|EV276737.1|EV276737
EST:     AAACAGAGGCAAAAATGAAGATGGTAACAGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
EST: gi|6502133|gb|AW203506.1|AW203506
EST:     AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
EST: gi|298175327|gb|HO015986.1|HO015986
EST:     AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
EST: gi|192300730|gb|FG991112.1|FG991112
EST:     AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAG                         AAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG
genomic: AAACAGAGGCAAAAATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGgtaattaaat ... gtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactgcataattttttgtattcaattttcacatttatttttactgtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG
 tgctaaa  putative branch site (score: 2)
                                     tttttactgtcttctc  putative PPT
       ataattttttgtattc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattaaattttcaagaacctgtgtagttaggtatttaggttatatggatatgcatagggtttgtgaaaagggacccgcctcccccaatggttagataagcctgagtaatatatgctatattgctatatgctaaaactgcataattttttgtattcaattttcacatttatttttactgtcttctcagAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG