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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgccatacattctcatagcaatttctttacccaatttcttccgtctacttattttagtgctcactgatcattcattttcgttttatatttacagGAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCGTGCCAAATTGGGCATGGCAAGTCCAAGGTCCTTATGGCAGGGCAACTCTTGCTCCACCCTTCT

Basic information

species Glycine max
transcript GLYMA19G36200.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732890|gb|BM527307.1|BM527307
EST:     GGCAACATCCTTCCGTCTGGAATGGTAGCAATTTCTTTCCTATCTACGAG                         GAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCGTGCCAAATTGGGCA
genomic: GGCAACATCCTTCCGTCTGGAATGGTAGCAATTTCTTTCCTATCTACGAGgtgattgcca ... atatttacagGAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCGTGCCAAATTGGGCA
EST: gi|120495543|gb|EH223710.1|EH223710
EST:     GGCAACATCCTTCCGTCTGGAATGGTAGCAATTTCTTTCCTATCTACGAG                         GAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCGTGCCAAATTGGGCA
genomic: GGCAACATCCTTCCGTCTGGAATGGTAGCAATTTCTTTCCTATCTACGAGgtgattgcca ... atatttacagGAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCGTGCCAAATTGGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgtctacttattttagtgctcactgatcattcattttcgttttatatttacagGAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCGTGCCAAATTGGGCATGGCAAGTCCAAGGTCCTTATGGCAGGGCAACTCTTGCTCCACCCTTCT
                              attcattttcgtttta  TA-rich tract