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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggacgcaacgcaagtagaagattcgttttatattaactgcttcagttttctttaatatcgctttctttttctttttttcttttagGTGGATTTGACACCGCGCATGTTGCGGCAAG

Basic information

species Glycine max
transcript GLYMA19G36200.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495540|gb|EH223707.1|EH223707
EST:     GGACTGTGGGAAACAAGTGTACTTGG                         GTGGATTTGACACCGNGCATGTTGCG
genomic: GGACTGTGGGAAACAAGTGTACTTGGgtgaggacgc ... tttcttttagGTGGATTTGACACCGCGCATGTTGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattaactgcttcagttttctttaatatcgctttctttttctttttttcttttagGTGGATTTGACACCGCGCATGTTGCGGCAAG
               ttttctttaatatcgc  CT-rich tract
                               tttctttttctttttt  TA-rich tract