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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggttgaggagtgttgtatgatggcccatatggttggattcaattattctttgagtctgcatttttcatttgtttctgaattagcagtttgtatttttttacttcgcgtaatagTTTGAGCACTCTGGATCAAGATCACGGACCATTCAGCCACCTCATCATGGCTTCTCCATAGCATCTGGGCAACATCCTTCCGTCTGGAATGGTAGCAATT

Basic information

species Glycine max
transcript GLYMA19G36200.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732890|gb|BM527307.1|BM527307
EST:     TGATAGCTCCGCAGAGCTGGGATGATATCCCTCTCGATAAGCGAGTTATG                         TTTGAGCACTCTGGATCAAGATCACGGACCATTCAGCCACCTCATCATGGC
genomic: TGATAGCTCCGCAGAGCTGGGATGATATCCCTCTCGATAAGCGAGTTATGgtaaggttga ... cgcgtaatagTTTGAGCACTCTGGATCAAGATCACGGACCATTCAGCCACCTCATCATGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttttcatttgtttctgaattagcagtttgtatttttttacttcgcgtaatagTTTGAGCACTCTGGATCAAGATCACGGACCATTCAGCCACCTCATCATGGCTTCTCCATAGCATCTGGGCAACATCCTTCCGTCTGGAATGGTAGCAATT
                                tatttttttacttc  CT-rich tract
                            tttgtatttttttact  TA-rich tract