1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatttgtcttattattttgtcaaacttcctcattcatttctaatagttttataatttgttttctatcattcttgcagAGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTTGACCTGCCAGGAGGTATCCCAGAATCTTGGCCTAAGTTGCTGCAAGCTC
species | Glycine max |
transcript | GLYMA19G36120.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAAGAAAGGCTTCGTATATACAATGAAAAG AGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTTEST: gi|8283782|gb|BE021341.1|BE021341
genomic: CAAAGAAAGGCTTCGTATATACAATGAAAAGgtatttgtct ... attcttgcagAGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTT
EST: ATGATACTGAAGCAGTAGTCAAAGAAAGGCTTCGTATATACAATGAAAAG AGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTTEST: gi|192315466|gb|FK009674.1|FK009674
genomic: ATGATACTGAAGCAGTAGTCAAAGAAAGGCTTCGTATATACAATGAAAAGgtatttgtct ... attcttgcagAGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTT
EST: ATGATACTGAAGCAGTAGTCAAAGAAAGGCTTCGTATATACAATGAAAAG AGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTTEST: gi|16345447|gb|BI971042.1|BI971042
genomic: ATGATACTGAAGCAGTAGTCAAAGAAAGGCTTCGTATATACAATGAAAAGgtatttgtct ... attcttgcagAGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTT
EST: ATGATACTGAAGCAGTAGTCAAAGAAAGGCTTCGTATATACAATGAAAAG AGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTTEST: gi|192315467|gb|FK009675.1|FK009675
genomic: ATGATACTGAAGCAGTAGTCAAAGAAAGGCTTCGTATATACAATGAAAAGgtatttgtct ... attcttgcagAGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTT
EST: ATGATACTGAAGCAGTAGTCAAAGAAAGGCTTCGTATATACAATGAAAAG AGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTT
genomic: ATGATACTGAAGCAGTAGTCAAAGAAAGGCTTCGTATATACAATGAAAAGgtatttgtct ... attcttgcagAGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTT
aacttcctcattcatttctaatagttttataatttgttttctatcattcttgcagAGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTTGACCTGCCAGGAGGTATCCCAGAATCTTGGCCTAAGTTGCTGCAAGCTC
ttctaat putative branch site (score: 2)
ttttctatcattctt putative PPT
attcatttctaatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtcttattattttgtcaaacttcctcattcatttctaatagttttataatttgttttctatcattcttgcagAGTCAGCCCGTGGAGGAATTTTACCGTAGTAGAGGGAAACTGTTGGAGTTTGACCTGCCAGGAGGTATCCCAGAATCTTGGCCTAAGTTGCTGCAAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT