1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttaagaagtagcatagtttttaactaaaagcgaattataagaggatagtatatttatcttttttgctttctgtttttcaatcattgatctttttacagCTATCAGAAATTGTTAATCAAGGCAAATTGGTGTCAGATGAAATCATAATAAGTTTATTGTCAAAGAGGCTGGCTGATGGGGAAGCTAAAGGCGAATCAG
species | Glycine max |
transcript | GLYMA19G36120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGATCTTGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTTAATCAAGGCAAATTGGTGTCAGATGAAATCATAATAEST: gi|208254943|gb|GE056571.1|GE056571
genomic: GCGATCTTGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtctcatcct ... ctttttacagCTATCAGAAATTGTTAATCAAGGCAAATTGGTGTCAGATGAAATCATAATA
EST: GCGATCTTGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTTAATCAAGGCAAATTGGTG
genomic: GCGATCTTGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtctcatcct ... ctttttacagCTATCAGAAATTGTTAATCAAGGCAAATTGGTG
gatagtatatttatcttttttgctttctgtttttcaatcattgatctttttacagCTATCAGAAATTGTTAATCAAGGCAAATTGGTGTCAGATGAAATCATAATAAGTTTATTGTCAAAGAGGCTGGCTGATGGGGAAGCTAAAGGCGAATCAG
cattgat putative branch site (score: 4)
tctttttac CT-rich tract
tatatttatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaagaagtagcatagtttttaactaaaagcgaattataagaggatagtatatttatcttttttgctttctgtttttcaatcattgatctttttacagCTATCAGAAATTGTTAATCAAGGCAAATTGGTGTCAGATGAAATCATAATAAGTTTATTGTCAAAGAGGCTGGCTGATGGGGAAGCTAAAGGCGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT