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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCATAATAAGTTTATTGTCAAAGAGGCTGGCTGATGGGGAAGCTAAAGGCGAATCAGGATTTATTCTTGATGGTTTTCCTCGAACAATAAATCAAGCAgtgagtattgatacccacctaatgcccttatattaattagtatatgtgcttgtagttggctgtgatttttcttgggactaactaaccacacaagtggctatattttctgtcctcgacgatttcctgacattcacttttcataactgcgatctacttaaaatgtgcttgaaacctgtgtgctcag

Basic information

species Glycine max
transcript GLYMA19G36120.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36120.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0067g03360.t01 (Vitis vinifera), 5'ss of exon 2
AATCATAATAAGTTTATTGTCAAAGAGGCTGGCTGATGGGGAAGCTAAAGGCGAATCAGGATTTATTCTTGATGGTTTTCCTCGAACAATAAATCAAGCAgtgagtattgatacccacctaatgcccttatattaattagtatatgtgcttgtagttggctgtgattttt-cttgggactaactaaccacacaagtggctatattttctgtcctcgacgatttcctgacattcacttttcataactgcgatctacttaaaatgtgcttgaaacctgtgtgctcag
||| ||||||| ||| ||||| ||| | || |  | ||| ||| | || || ||| |||||||||||||||||||||| |||||||||||||  || || ||||| |        || ||       | ||| | || |  | |  ||  | | | |  || ||| || |  ||   | ||| ||   |  | |   |||| | |          |                                                                     
AATTATAATAAATTTGTTGTCCAAGCGTCTTGAAGCTGGAGAATCCAAGGGTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagca--------catct------ttgataattataacaaaacatgaatttggctcactatgaattatgtttattattaaatag--atgctaagagctacagtaggaaaagcag---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209697937|gb|BW670139.1|BW670139
EST:     GCGAATCAGGATTTATTCTTGATGGTTTTCCTCGAACAATAAATCAAGCA                         GAAATATTGGAAGGGGTAACTGACATTGACTTGGTGGTCAATCTGAAGCTC
genomic: GCGAATCAGGATTTATTCTTGATGGTTTTCCTCGAACAATAAATCAAGCAgtgagtattg ... gtgtgctcagGAAATATTGGAAGGGGTAACTGACATTGACTTGGTGGTCAATCTGAAGCTC
EST: gi|192315466|gb|FK009674.1|FK009674
EST:     ATTCTTGATGGTTTTCCTCGAACAATAAATCAAGCA                         GAAATATTGGAAGGGGTAACTGACATTGACTTGGTGGTCAATCTGAAGCTC
genomic: ATTCTTGATGGTTTTCCTCGAACAATAAATCAAGCAgtgagtattg ... gtgtgctcagGAAATATTGGAAGGGGTAACTGACATTGACTTGGTGGTCAATCTGAAGCTC
EST: gi|192315467|gb|FK009675.1|FK009675
EST:     TCTTGATGG-TTTCCTCGAACAATAAATCAAGCA                         GAAATA-TGGAAGGGGTAACTGACATTGACTTGGTGGTCAATCTGAAGCTC
genomic: TCTTGATGGTTTTCCTCGAACAATAAATCAAGCAgtgagtattg ... gtgtgctcagGAAATATTGGAAGGGGTAACTGACATTGACTTGGTGGTCAATCTGAAGCTC