1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGgtaggccatgatgtagtttccaaacttctgctacagtgttgatttgctcttaagatggttattgatctcttatggattttatgagctttaaatcattgatttcaatgttgaattgttctaacag
species | Glycine max |
transcript | GLYMA19G35990.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAG CCGACATG-ACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCGEST: gi|151406157|gb|EV275972.1|EV275972
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGgtaggccatg ... gttctaacagCCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAG CCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCGEST: gi|208093331|gb|GD895226.1|GD895226
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGgtaggccatg ... gttctaacagCCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAG CCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCGEST: gi|298180260|gb|HO025475.1|HO025475
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGgtaggccatg ... gttctaacagCCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAG CCGACATGGACGGAGTCTTTCACGTTCACCGGTCCEST: gi|7042407|gb|AW472301.1|AW472301
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGgtaggccatg ... gttctaacagCCGACATGGACGGAGTCTTTCACGTTCACCGGTCC
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCCAAAAGTCGAG CCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCAEST: gi|298165666|gb|HO008637.1|HO008637
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGgtaggccatg ... gttctaacagCCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCG
EST: GAAAGAGGTCATGTAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAG CCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTEST: gi|193303933|gb|FK270746.1|FK270746
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGgtaggccatg ... gttctaacagCCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCT
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAG CCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCG
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGgtaggccatg ... gttctaacagCCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGgtaggccatgatgtagtttccaaacttctgctacagtgttgatttgctcttaagatggttattgatctcttatggattttatgagctttaaatcattgatttcaatgttgaattgttctaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC