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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttatttgttatttgttatatgttcatatgatacgattaataagggatctctttgttcaattaattttgaaatttcctttgtttgttttgccgagctagAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGCTTGTCTTCGAGGACACGTTCCCGTGACCTGGAGCGTG

Basic information

species Glycine max
transcript GLYMA19G35990.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406157|gb|EV275972.1|EV275972
EST:     CCACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAG                         AAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTC
genomic: CCACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAGgttttaactt ... gccgagctagAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTC
EST: gi|298183446|gb|HO028659.1|HO028659
EST:     ACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAG                         AAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTC
genomic: ACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAGgttttaactt ... gccgagctagAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTC
EST: gi|298180260|gb|HO025475.1|HO025475
EST:     ACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAG                         AAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTC
genomic: ACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAGgttttaactt ... gccgagctagAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTC
EST: gi|7042407|gb|AW472301.1|AW472301
EST:     ATCCACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAG                         AAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTC
genomic: ATCCACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAGgttttaactt ... gccgagctagAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTC
EST: gi|298165666|gb|HO008637.1|HO008637
EST:     ATCCACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAG                         AAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTC
genomic: ATCCACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAGgttttaactt ... gccgagctagAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatctctttgttcaattaattttgaaatttcctttgtttgttttgccgagctagAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGCTTGTCTTCGAGGACACGTTCCCGTGACCTGGAGCGTG
              aattaat  putative branch site (score: 3)
                                         ttttgcc  putative PPT
       tttgttcaattaattt  TA-rich tract