1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggtctttattgatgaatgagggttttttgggttttaattttatgtattcagatttttctgttgtttttgaggcccttttcttttgttctttaatttgaagGGGTTTGGAGGAATCAAATGTTGATAGCTTTTTCGAAGATGTTTTGGTGAATGGTAAACCATGGACTGCTGGAGTTCCGGAGGTGTTTAGTGGTTCACAT
species | Glycine max |
transcript | GLYMA19G10120.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTTCCTCGACGGTGACGTGTTGATTTTCCCCGACATGATCAAATACAG GGGTTTGGAGGAATCAAATGTTGATAGCTTTTTCGAAGATGTTTTGGTGAAEST: gi|10237899|gb|BE806787.1|BE806787
genomic: GGCTTCCTCGACGGTGACGTGTTGATTTTCCCCGACATGATCAAATACAGgtgaattgga ... taatttgaagGGGTTTGGAGGAATCAAATGTTGATAGCTTTTTCGAAGATGTTTTGGTGAA
EST: GGCTTCCTCGACGGTGACGTGTTGATTTTCCCCGACATGATCAAATACAG GGGTTTGGAGGAATCAAATGTTGATAGCTTTTTCGAAGATGTTTTGGTGAA
genomic: GGCTTCCTCGACGGTGACGTGTTGATTTTCCCCGACATGATCAAATACAGgtgaattgga ... taatttgaagGGGTTTGGAGGAATCAAATGTTGATAGCTTTTTCGAAGATGTTTTGGTGAA
attcagatttttctgttgtttttgaggcccttttcttttgttctttaatttgaagGGGTTTGGAGGAATCAAATGTTGATAGCTTTTTCGAAGATGTTTTGGTGAATGGTAAACCATGGACTGCTGGAGTTCCGGAGGTGTTTAGTGGTTCACAT
ctttaat putative branch site (score: 4)
cccttttcttttgttc CT-rich tract
ttttcttttgttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtctttattgatgaatgagggttttttgggttttaattttatgtattcagatttttctgttgtttttgaggcccttttcttttgttctttaatttgaagGGGTTTGGAGGAATCAAATGTTGATAGCTTTTTCGAAGATGTTTTGGTGAATGGTAAACCATGGACTGCTGGAGTTCCGGAGGTGTTTAGTGGTTCACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - -gaatgag
- - - - - - - - - -gggtttt
- - - - - - - - - - - - - - - - - - - - - tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgttg