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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgccccttcgttcattccttcttgtttttcgacgaatagaaaattagagtatggatggtttctatgtttggttgcgatttttcgctacgatctgaggttgacttcggtgtttgactttgcagACGAAAATCACCGTGTGCGAGGTGCGTGAGGAGGCTGGCTTCCTCGACGGTGACGTGTTGATTTTCCCCGACATGATCAAATACAG

Basic information

species Glycine max
transcript GLYMA19G10120.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986097|gb|BE660205.1|BE660205
EST:     AGCGCGTCGCCGCCACCTTCAAAGCCCGCAAGAACGACTTGCCCCTCAAG                         ACGAAAATCACCGTGTGCGAGGTGCGTGAGGAGGCTGGCTTCCTCGACGGT
genomic: AGCGCGTCGCCGCCACCTTCAAAGCCCGCAAGAACGACTTGCCCCTCAAGgtccgcccct ... gactttgcagACGAAAATCACCGTGTGCGAGGTGCGTGAGGAGGCTGGCTTCCTCGACGGT
EST: gi|10237899|gb|BE806787.1|BE806787
EST:     AGCGCGTCGCCGCCACCTTCAAAGCCCGCAAGAACGACTTGCCCCTCAAG                         ACGAAAATCACCGTGTGCGAGGTGCGTGAGGAGGCTGGCTTCCTCGACGGT
genomic: AGCGCGTCGCCGCCACCTTCAAAGCCCGCAAGAACGACTTGCCCCTCAAGgtccgcccct ... gactttgcagACGAAAATCACCGTGTGCGAGGTGCGTGAGGAGGCTGGCTTCCTCGACGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttgcgatttttcgctacgatctgaggttgacttcggtgtttgactttgcagACGAAAATCACCGTGTGCGAGGTGCGTGAGGAGGCTGGCTTCCTCGACGGTGACGTGTTGATTTTCCCCGACATGATCAAATACAG
                                         gtttgac  putative branch site (score: 4)
         attttt  TA-rich tract