Sequence
atgc intronic sequence ATGC exonic sequenceAGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGgtgtggatttgttcatttcgttaccacaacaaataaacatggaattaggttgtgctaactgatatctattccgtgcaggacttctcaaataaaatgttta...
Basic information
species | Glycine max |
transcript | GLYMA19G08930.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G08930.2 (Glycine max), 5'ss of exon 7
lower sequence: AT5G40530.1 (Arabidopsis thaliana), 5'ss of exon 7
AGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGgtgtggatttgt--------tcatttcgttaccacaacaaataaacatggaattaggttgtgctaactgatatctattccgtgcaggacttctcaaataaaatgttta
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AGCGGAAGTAAAGAGCAGGTTTGATCCAAACAATGGAGGAGCAGACCCAAAAGACTTTGTGAAAGCCGTTTGTGATCTTGGATTTACTTCGGTTTTAAAGgtgcaatcttttcttcttctttttttcatttccactataagaaagaaactcatttggttctttgagcag---------------------------------------
upper sequence: GLYMA19G08930.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0066g00390.t01 (Vitis vinifera), 5'ss of exon 6
AGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGgtgtggatttgttcatttcgttaccacaacaaataaacatggaattaggttgtgctaactgatatctattccgtgcaggacttctcaaataaaatgttta
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AGCAGAGGTAAAGAGTAGGTTCGATCCAAGTAATGGAGGAGCAGACCCAAATAGGTTTTCAAAAGCCATCTGCAAGCTAGGTTTTACACTAGAATCAAAGgtttattcatgttcctcttgt--cttctagaaataaattaatcctttcttcatgctaattgatacttactatgtgcag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51343885|gb|CO984618.1|CO984618EST: AAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAG GAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCT
genomic: AAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGgtgtggattt ... ttgtgcgtagGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGgtgtggatttgttcatttcgttaccacaacaaataaacatggaattaggttgtgctaactgatatctattccgtgcaggacttctcaaataaaatgttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaaa