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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcatattagtgcattcaccaacttaacattgagatgtaatggtttgaatatctcatttttattggcttgtctcaatttgtctttcatttatctgtctagTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTG

Basic information

species Glycine max
transcript GLYMA19G08930.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057623|gb|CA800537.1|CA800537
EST:     GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTG                         TATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
genomic: GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGgtaagggctg ... atctgtctagTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
EST: gi|151406301|gb|EV276116.1|EV276116
EST:     GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTG                         TATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
genomic: GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGgtaagggctg ... atctgtctagTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
EST: gi|298197544|gb|HO045023.1|HO045023
EST:     GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTG                         TATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
genomic: GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGgtaagggctg ... atctgtctagTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
EST: gi|193499359|gb|FK462106.1|FK462106
EST:     GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTG                         TATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
genomic: GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGgtaagggctg ... atctgtctagTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
EST: gi|192327181|gb|FK015573.1|FK015573
EST:     NNNNNNAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTG                         TATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
genomic: GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGgtaagggctg ... atctgtctagTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
EST: gi|254349200|gb|GR859945.1|GR859945
EST:     GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTG                         TATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
genomic: GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGgtaagggctg ... atctgtctagTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
EST: gi|51343885|gb|CO984618.1|CO984618
EST:     GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTG                         TATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT
genomic: GGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGgtaagggctg ... atctgtctagTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatatctcatttttattggcttgtctcaatttgtctttcatttatctgtctagTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTG
                                   tctttcatttatct  CT-rich tract
     atctcatttttatt  TA-rich tract