1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctctctctcgatgtacattttcaaaaacctattttctaatattattacatgaaccatctcgagttctattccattaagttaatttcttgtcaattctcagGTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTCGTAAAAGTGATTCATTTTGATAAGGAATCAAAGGA
species | Glycine max |
transcript | GLYMA19G08050.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAG GTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTCEST: gi|151403633|gb|EV273443.1|EV273443
genomic: CTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAGgtatgcattt ... caattctcagGTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTC
EST: CTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAG GTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTCEST: gi|208128999|gb|GD928481.1|GD928481
genomic: CTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAGgtatgcattt ... caattctcagGTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTC
EST: CTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAG GTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTCEST: gi|208330842|gb|GE126403.1|GE126403
genomic: CTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAGgtatgcattt ... caattctcagGTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTC
EST: CTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAG GTAGCAGCTAGGGTCACACCA
genomic: CTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAGgtatgcattt ... caattctcagGTAGCAGCTAGGGTCACACCA
tacatgaaccatctcgagttctattccattaagttaatttcttgtcaattctcagGTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTCGTAAAAGTGATTCATTTTGATAAGGAATCAAAGGA
agttaat putative branch site (score: 4)
tttcttgtc CT-rich tract
attaagttaatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctctctcgatgtacattttcaaaaacctattttctaatattattacatgaaccatctcgagttctattccattaagttaatttcttgtcaattctcagGTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTCGTAAAAGTGATTCATTTTGATAAGGAATCAAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
ctctctc
- - - - - - - - - - -caaaaac
- - - - - - - - - - - - - - - - - - - - - - - -catgaac