1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtttaatctgtctgtagctatgaagcattttatatgaattgcattttattttctgatatgctgaaaattatagccatgggttttgacattatagtaacttgacatactctgtccaggctaggcattctatagcatatgattcttgatattgattttggttgcagTATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAG
species | Glycine max |
transcript | GLYMA19G08050.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAG TATTTCCAACTTACTGATAAACCAAATTEST: gi|151403633|gb|EV273443.1|EV273443
genomic: CTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAGgtatgtttaa ... ttggttgcagTATTTCCAACTTACTGATAAACCAAATT
EST: CTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCGGAAAGTGAAGCAAG TATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCCEST: gi|193339594|gb|FK302785.1|FK302785
genomic: CTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAGgtatgtttaa ... ttggttgcagTATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCC
EST: CTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAG TATTTCCAACTTACTGATAAACCAAATTEST: gi|207822826|gb|GD793627.1|GD793627
genomic: CTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAGgtatgtttaa ... ttggttgcagTATTTCCAACTTACTGATAAACCAAATT
EST: CTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAG TATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCCEST: gi|208330842|gb|GE126403.1|GE126403
genomic: CTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAGgtatgtttaa ... ttggttgcagTATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCC
EST: CTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAG TATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCC
genomic: CTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAGgtatgtttaa ... ttggttgcagTATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCC
tgtccaggctaggcattctatagcatatgattcttgatattgattttggttgcagTATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAG
tattgat putative branch site (score: 3)
ttgatattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttaatctgtctgtagctatgaagcattttatatgaattgcattttattttctgatatgctgaaaattatagccatgggttttgacattatagtaacttgacatactctgtccaggctaggcattctatagcatatgattcttgatattgattttggttgcagTATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG