Sequence
atgc intronic sequence ATGC exonic sequenceTCAGCTGCTCTGATGAGGACTTACAGCAGTATAAAGGCCATGATCTGGCTCCCACACATTATGTCCCTTCTATGAGTCGACATCCATTAACAGGAGATTGgtaaaagaaaattttctgtttctttcaattttcaattccattatgtgaactattcagttattgcctgttatttctgcactgacatttactgcatgattag...
Basic information
species | Glycine max |
transcript | GLYMA19G07790.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G07790.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G177198_T01 (Zea mays), 5'ss of exon 6
TCAGCTGCTCTGATGAGGACTTACAGCAGTATAAAGGCCATGATCTGGCTCCCACACATTATGTCCCTTCTATGAGTCGACATCCATTAACAGGAGATTGgtaaaagaaaattttctgtttctttcaattttcaattccattatgtgaactattcagttattgcctgttatttctgcactgacatttactgcatgattag
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TGAGCTGTACGGATGAGGACTTAAAGAACTATAAAGGACATGATCTTGCTCCCACACATTATGTTCCATCTATGAGCCGACATCCATTGACAGGGGACTGgtataa------cctcttggtttaacagtctctaaagctattgttcaagacaacccgct----catatagttcttttgctag------------------
upper sequence: GLYMA19G07790.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G479373_T01 (Zea mays), 5'ss of exon 11
------TCAGCTGCTCTGATGAGGACTTACAGCAGTATAAAGGCCATGATCTGGCTCCCACACATTATGTCCCTTCTATGAGTCGACATCCATTAACAGGAGATTGgtaaaagaaaattttctgtttctttcaattttcaattccattatgtgaactattcagttattgcctgttatttctgcactgacatttactgcatgattag
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GCTTATTGAGCTGTACGGATGAGGACTTAAAG------AAAGGACATGATCTTGCTCCCACACATTATGTTCCATCTATGAGCCGACATCCATTGACAGGGGACTGgtataa------cctcttggtttaacattctctaaagctattgttcaagacaacccgct----catatagttcttttgctag------------------
upper sequence: GLYMA19G07790.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0219g00080.t01 (Vitis vinifera), 5'ss of exon 5
TCAGCTGCTCTGATGAGGACTTACAGCAGTATAAAGGCCATGATCTGGCTCCCACACATTATGTCCCTTCTATGAGTCGACATCCATTAACAGGAGATTGgtaaaagaaaattttctgtttctttcaattttcaattccattatgtgaactattcagttattgcctgttatttctgcactgacatttactgcatg-attag----
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TCAGCTGTACAGATGAAGACTTAAAGCTATACACAGGCCATGATCTGGCTCCCACCCATTATGTTCCTTCTATGAGCCGACATCCATTAACAGGCGATTGgtaattc----tcttctctccatatatattttcttcagaattggagaacttgattgctggtcattcgagcttctagcacttacatctag-gcatgcatttcacatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254316418|gb|GR827955.1|GR827955EST: CCCACACATTATGTCCCTTCTATGAGTCGACATCCATTAACAGGAGATTG GTACCCAGCAATTAATAAACCAGCTGCAGTCCTTCACTGGCTTAATCATGT
genomic: CCCACACATTATGTCCCTTCTATGAGTCGACATCCATTAACAGGAGATTGgtaaaagaaa ... tttattttagGTACCCAGCAATTAATAAACCAGCTGCAGTCCTTCACTGGCTTAATCATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAGCTGCTCTGATGAGGACTTACAGCAGTATAAAGGCCATGATCTGGCTCCCACACATTATGTCCCTTCTATGAGTCGACATCCATTAACAGGAGATTGgtaaaagaaaattttctgtttctttcaattttcaattccattatgtgaactattcagttattgcctgttatttctgcactgacatttactgcatgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT