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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcaatgccttaacacgattttttgtttcaggaattataaactatatacctactgtaactctgtgccaactgtctagcacttcattttagtgtttaactattcagttttcacaaattattttgcatgttttcttctgtcctcccctttgggctctcccttcacagGTTGGACTTCGGCATAAAATCAATGATAACTTAATGATCTACCCAGGTTATGTTCCTCGTGAGGGAATTGAGCCGATTCTTCTTCACTATGGGTTGCCAT

Basic information

species Glycine max
transcript GLYMA19G07790.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G07790.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0219g00080.t01 (Vitis vinifera), 3'ss of exon 3
gtgagttcaatgccttaacacgattttttgtttcaggaattataaactatatacctactgtaactctgtgccaactgtctagcacttcattttagtgtttaactattcagttttcacaaattattttgcatgttttcttctgtcctcccctttgggctctcc-cttcacagGTTGGACTTCGGCATAAAATCAATGATAACTTAATGATCTACCCAGGTTATGTTCCTCGTGAGGGAATTGAGCCGATTCTTCTTCACTATGGGTTGCCAT
                                                                                           | |||  ||   | ||  ||||   | ||  ||    | | | | |     |       |||| | |||   |||  ||||| |||||||| ||||| || ||||||||||| ||| |||||||||| ||| |||| |  || || |||||||| ||||||||||||||||| |||||||
------------------------------------------------------------------------------------------gtaagttatt--ttgttttgtttgtcccaagcatcgaacttttctacaatgcttaatatttttgtgttctttgcttttcagGTGGGACTTCGACATAAGATAAATGATAACTTGATGCTCTACCCAGGCTATATTCCGCAAGATGGCATTGAGCCTATTCTTCTTCACTATGGCTTGCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaattattttgcatgttttcttctgtcctcccctttgggctctcccttcacagGTTGGACTTCGGCATAAAATCAATGATAACTTAATGATCTACCCAGGTTATGTTCCTCGTGAGGGAATTGAGCCGATTCTTCTTCACTATGGGTTGCCAT
               tgttttcttctgtcct  CT-rich tract
     ttatttt  TA-rich tract