Sequence
atgc intronic sequence ATGC exonic sequenceAGAAAGAGCACAGATGGATTTAGCATTGGCTCTGTTCTCCTTGATTTTTCTGGAGGGGTCTTTAATTATTCACAAATGCTTGTGCAGTCCAAAGATCAAGgtttgtgaagtaattatgagttagaatctgccatcagattttatccttgatttcaactttaatgatgaatttcaacttaattatctaaatctag
Basic information
species | Glycine max |
transcript | GLYMA19G07750.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G07750.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0219g00130.t01 (Vitis vinifera), 5'ss of exon 6
AGAAAGAGCACAGATGGATTTAGCATTGGCTCTGTTCTCCTTGATTTTTCTGGAGGGGTCTTTAATTATTCACAAATGCTTGTGCAGTCCAAAGATCAAGgtttgtgaagta----attatgagttagaatctgccatc--agattt---tatccttgatttcaactttaatgatgaatttcaacttaattatctaaatctag
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CGAAAGAGCACAGATGGATTTAGCATTGGCAACATTTTATTCGATCTAAGTGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATCAACCAAGgtgtgtcatctattccactaccaaacagatgttggcatctgaaatttatgtactcacatctgtatgattatttatgaacttctcgtcgtttttccag------
upper sequence: GLYMA19G07750.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0219g00120.t01 (Vitis vinifera), 5'ss of exon 6
AGAAAGAGCACAGATGGATTTAGCATTGGCTCTGTTCTCCTTGATTTTTCTGGAGGGGTCTTTAATTATTCACAAATGCTTGTGCAGTCCAAAGATCAAGgtttgtgaagta----attatgagttagaatctgccatcagattttatccttgatttcaactttaatgatgaatttcaacttaattatctaaatctag
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CGGAAGAGCACAGATGGATTTAGCATTGGCAACATTTTACTAGATTTATGTGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatttgttccactaccaaattgatactgccatctgaaatt-tatatactcacatgtgtatgaccatgtatgaactcaat-gtcttcttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22931200|gb|BU548339.1|BU548339EST: TGGAGGGGTCTTTAATTATTCACAAATGCTTGTGCAGTCCAAAGATCAAG GTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTG
genomic: TGGAGGGGTCTTTAATTATTCACAAATGCTTGTGCAGTCCAAAGATCAAGgtttgtgaag ... ctaaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAAGAGCACAGATGGATTTAGCATTGGCTCTGTTCTCCTTGATTTTTCTGGAGGGGTCTTTAATTATTCACAAATGCTTGTGCAGTCCAAAGATCAAGgtttgtgaagtaattatgagttagaatctgccatcagattttatccttgatttcaactttaatgatgaatttcaacttaattatctaaatctag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA