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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggacttgaatttttcaaatggctagcaaaataatacaacacgagtcaccaatgtactgccaacaaatatcaaaatcaactttgtctttgtgcaaaatcattagatattcacgttatctagtttagctttatgatctcttgttattattgcattgcagATGATTCCTGTAGCCGCTAATGATGTTGCTTTCTCCATTCATTCAGTCATATTAAATTTAATTATACTGTCCCAAATTTCAATGTTTGAA

Basic information

species Glycine max
transcript GLYMA19G07750.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G07750.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G015869_T02 (Zea mays), 3'ss of exon 2
gtgggacttgaatttttcaaatggctagcaaaataatacaacacgagtcaccaatgtactgccaacaaatatcaaaatcaactttgtctttgtgcaaaatcattagatattcacgttatc-tagttt---agctttatgatctcttgttattattgcattgcagATGATTCCTGTAGCCGCTAATGATGTTGCTTTCTCCATTCATTCAGTCATATTAAATTTAATTATACTGTCCCAAATTTCAATGTTTGAA
                                                               || |||      | |   | |    | |||| | |  ||||    |   | |  ||  |||| |   | |  | |||    |  || ||  |  || ||||||||||||||| || || |||||||||||||| ||  | ||| | ||   ||| |      |||   | |  ||| | |  || | ||| 
---------------------------------------------------------------aataaaacatctatttgccataacatctgtgaacagacatttttcaactatgaaatggtagtctccaatccatttgacagttcatttttcctttat-gcagATGATTCCTGTTGCTGCAAATGATGTTGCTTTTTCACTGCATGCTGTAGCATTGACAGCCTTTACCGTTTTTCAAGTATTCATATATGAG

upper sequence: GLYMA19G07750.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0219g00130.t01 (Vitis vinifera), 3'ss of exon 2
gtgggacttgaatttttcaaatggctagcaaaataatacaacacgagtcaccaatgtactgccaacaaatatcaaaatcaactttgtctttgtgcaaaatcattagatattcacgttatctagtttagctttatgatctcttgt----tattattgcattgcagATGATTCCTGTAGCCGCTAATGATGTTGCTTTCTCCATTCATTCAGTCATATTAAATTTAATTATACTGTCCCAAATTTCAATGTTTGAA
                                                                                     || ||| |         ||  |  ||  |  |      ||| | ||| | || | | ||    | || |    ||||||||||| ||||| || || ||||||||||||||||| |||||| | ||  | || |    | |||    || ||||||| |||| | ||| 
-------------------------------------------------------------------------------------gtttttattttcgggtctttcaggttttccctcctctttttggatttttaatatgtggtgaaatgttttcttgttgcagATGATACCTGTGGCTGCAAATGATGTTGCTTTCTCAATTCATGCTGTTGTCTTGATAGCATTTACTTGGTTCCAAATTGCAATCTATGAG

upper sequence: GLYMA19G07750.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 2
gtgggacttgaatttttcaaatggctagcaaaataatacaacacgagtcaccaatgtactgccaacaaatatcaaaatcaactttgtctttgtgcaaaatcattagatattcacgttatctagtttagctttatgatctcttgttat-tattgcattgcagATGATTCCTGTAGCCGCTAATGATGTTGCTTTCTCCATTCATTCAGTCATATTAAATTTAATTATACTGTCCCAAATTTCAATGTTTGAA
                                                        ||||     |  || | ||||       ||     |  |||  |  |||  | |||   || |    |||      |  || |  || ||    ||  ||| |||||||| ||||| || || ||||||||||||||||| |||||| | || || || |    | |||   |||  |||||| |||| | ||| 
-------------------------------------------------------ttacttt--gcttatgttaaaaggg----tggaagagaacaagttgtttaagtgttccattttttcctttttttacaaatatgtggtgatacgctttttattacagATGATACCTGTGGCTGCAAATGATGTTGCTTTCTCAATTCATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatattcacgttatctagtttagctttatgatctcttgttattattgcattgcagATGATTCCTGTAGCCGCTAATGATGTTGCTTTCTCCATTCATTCAGTCATATTAAATTTAATTATACTGTCCCAAATTTCAATGTTTGAA
                                   ttgttattatt  TA-rich tract