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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgaagtaattatgagttagaatctgccatcagattttatccttgatttcaactttaatgatgaatttcaacttaattatctaaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTG

Basic information

species Glycine max
transcript GLYMA19G07750.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G07750.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0219g00130.t01 (Vitis vinifera), 3'ss of exon 6
gtttgtgaagta----attatgagttagaatctgccatcagattttatccttgatttcaactttaatgatgaatttcaacttaattatc-taaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTG
|| ||| |  ||    | ||  |   |||   || |||| ||  || |   |  |  || || || |||| | ||   |  |  |  || |   || |||||| ||||||||||||||||||||||| || ||  | || |||||  ||
gtgtgtcatctattccactaccaaacagatgttggcatctgaaatt-tatgtactcacatctgta-tgattatttatgaacttctcgtcgtttttccagGTTCTTGGGTGAACTTCTATGGAAACATAGGAAAGCTCTTGATATCTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22931200|gb|BU548339.1|BU548339
EST:     TGGAGGGGTCTTTAATTATTCACAAATGCTTGTGCAGTCCAAAGATCAAG                         GTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTG
genomic: TGGAGGGGTCTTTAATTATTCACAAATGCTTGTGCAGTCCAAAGATCAAGgtttgtgaag ... ctaaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatccttgatttcaactttaatgatgaatttcaacttaattatctaaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTG
                                           atctaaa  putative branch site (score: 3)
                  tttaatgatgaatttc  TA-rich tract