1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gctagtatcaatagtaattttgcttttgtatgttatgatatcagtattttgaaaatgacaatagttgaattgcttatgttattaaaatatgtatttctagTCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTATGATGTCAGCAGCGATGAGGAATGGGAAGAG
species | Glycine max |
transcript | GLYMA18G48000.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGCAAAAAG TCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTAEST: gi|208181613|gb|GD978492.1|GD978492
genomic: TTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGCAAAAAGgttagatttt ... gtatttctagTCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTA
EST: TTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGCAAAAAG TCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTAEST: gi|193356533|gb|FK321846.1|FK321846
genomic: TTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGCAAAAAGgttagatttt ... gtatttctagTCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTA
EST: TTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGCAAAAAG TCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTAEST: gi|208240759|gb|GE036817.1|GE036817
genomic: TTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGCAAAAAGgttagatttt ... gtatttctagTCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTA
EST: GGCCTGCAAAAAG TCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTAEST: gi|193488764|gb|FK453633.1|FK453633
genomic: GGCCTGCAAAAAGgttagatttt ... gtatttctagTCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTA
EST: TTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGC-AAAAG TCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTAEST: gi|193419948|gb|FK385386.1|FK385386
genomic: TTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGCAAAAAGgttagatttt ... gtatttctagTCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTA
EST: TTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGCAAAAAG TCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTA
genomic: TTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGCAAAAAGgttagatttt ... gtatttctagTCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTA
attttgaaaatgacaatagttgaattgcttatgttattaaaatatgtatttctagTCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTATGATGTCAGCAGCGATGAGGAATGGGAAGAG
tatttct CT-rich tract
aattgcttatgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagtatcaatagtaattttgcttttgtatgttatgatatcagtattttgaaaatgacaatagttgaattgcttatgttattaaaatatgtatttctagTCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTATGATGTCAGCAGCGATGAGGAATGGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg