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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tatatgctatcttgcgtcttgactgtcccaagcacttcacccgaagtcttaatgtttgtttcaatttctaaactatgtctggttgaacttgcagaAAAAAGCAGTGGGGGACCAAGGAGCATTGCTGCATTTTTTTCAAAAAGGTGCTTGCCCCCGACTGGGGAAGGTTCGAAACCTGGTGAAACTTCACCACTG

Basic information

species Glycine max
transcript GLYMA18G48000.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335241|gb|CO979107.1|CO979107
EST:     TGAAGAAAGAAGTTCTGGATAAGCTTGGCTCGGCAGTTAAACCTGA                         AAAAAGCAGTGGGGGACCAAGGAGCATTGCTGCANNNNNNNCAAAAAGGTG
genomic: TGAAGAAAGAAGTTCTGGATAAGCTTGGCTCGGCAGTTAAACCTGGtatatgctat ... aacttgcagaAAAAAGCAGTGGGGGACCAAGGAGCATTGCTGCATTTTTTTCAAAAAGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgaagtcttaatgtttgtttcaatttctaaactatgtctggttgaacttgcagaAAAAAGCAGTGGGGGACCAAGGAGCATTGCTGCATTTTTTTCAAAAAGGTGCTTGCCCCCGACTGGGGAAGGTTCGAAACCTGGTGAAACTTCACCACTG
                         ttctaaa  putative branch site (score: 2)
                  tttcaatttctaaa  TA-rich tract