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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTCCAATATTTACTGAAGAGGCACTTGGCGGGCTGGAGGGAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatacaactacaactacgtcatggcttgatctttaaagccataactataccttttcttttttttcttttcaaaacaaaactataaacgtatgcatttctgaattaacattttcatctggaatctttctcgataccag

Basic information

species Glycine max
transcript GLYMA18G47920.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47920.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g00820.t01 (Vitis vinifera), 5'ss of exon 8
GAGCTCCAATATTTACTGAAGAGGCACTTGGCGGGCTGGAGGGAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatacaactacaactacgtcatggcttgatctttaaagccataactataccttttcttttttttcttttcaaaacaaaactataaacgtatgcatttctgaattaacattttcatctggaatctttctcgataccag
 ||||||| ||||| ||||||||   || || |||  ||||||||| ||||| | |||| ||||| | ||||||||||||||||||||||| |||||||| |||  |  | |   | ||  |   | | |    |   |  || |   || | |   |||      | ||  ||||    |    ||   |  |||    |  | ||||| |||| |    |||          
-AGCTCCAGTATTTTCTGAAGAGATCCTCGGTGGGGAGGAGGGAGAGGGTGAAGGTGTAAAGCCAGTGGAAAGGTCCTTTTGGGCTAAATATgtgagtattcaa--aggagtgaataatttccgtaacct----gttctttct-tgttttgtttaactttgtagagccaagtaaaatagaacttctaaatacctcttgtctttctttttcttctgtatatgttcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208208298|gb|GE004257.1|GE004257
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|208303028|gb|GE100961.1|GE100961
EST:     TTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: TTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|254345763|gb|GR859410.1|GR859410
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|207757992|gb|GD727744.1|GD727744
EST:     GCCAATAGAAAGGTCCTTTTTTGGGTCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCA
genomic: GCCAATAGAAAGGTCC--TTTTGGG-CTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCA
EST: gi|193325160|gb|FK291410.1|FK291410
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTC
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTC
EST: gi|208059234|gb|GD859462.1|GD859462
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGAACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|193532996|gb|FK488546.1|FK488546
EST:     TTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: TTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|193591208|gb|FK546421.1|FK546421
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTG
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTG
EST: gi|193351792|gb|FK313833.1|FK313833
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|193604754|gb|FK557745.1|FK557745
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGACGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|254331915|gb|GR843658.1|GR843658
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|207706648|gb|GD688596.1|GD688596
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|31463611|gb|CD405639.1|CD405639
EST:     TGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: TGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|208208470|gb|GE008461.1|GE008461
EST:     GAGGCGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|208302857|gb|GE099152.1|GE099152
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|9985624|gb|BE659732.1|BE659732
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|208152618|gb|GD949121.1|GD949121
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|193710684|gb|FK647736.1|FK647736
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGAGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|193318100|gb|FK286224.1|FK286224
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|193380905|gb|FK348792.1|FK348792
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|254345762|gb|GR859409.1|GR859409
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|208172852|gb|GD972059.1|GD972059
EST:     GCCAATAGAAAGGTCCTTTTGGGTCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCA
genomic: GCCAATAGAAAGGTCCTTTTGGG-CTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCA
EST: gi|193480499|gb|FK444721.1|FK444721
EST:     AAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: AAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|193340217|gb|FK307838.1|FK307838
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|193442901|gb|FK404251.1|FK404251
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTT-GGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|207702293|gb|GD683048.1|GD683048
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCC
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCC
EST: gi|193661306|gb|FK600916.1|FK600916
EST:     TTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: TTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|207782115|gb|GD753686.1|GD753686
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|6095030|gb|AW119697.1|AW119697
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
EST: gi|208256364|gb|GE051747.1|GE051747
EST:     GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATAC                         TGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA
genomic: GAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACgtgagtatac ... tcgataccagTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAA