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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCTGACGAAGCTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctttgttttctttgcattgaactatttttgtatgtgtgttactgtgtttatattttggcatgttagcgttatctaaagatgtggcactcttctcttattaca

Basic information

species Glycine max
transcript GLYMA18G47920.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345763|gb|GR859410.1|GR859410
EST:     CAGA-GAAATTTAA                         AGAGCTG-TGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
genomic: CAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
EST: gi|298193158|gb|HO033592.1|HO033592
EST:     CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA                         AGAGCTGTTGCGAGA
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGA
EST: gi|192325685|gb|FK015042.1|FK015042
EST:     CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA                         A
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattaca-
EST: gi|192325685|gb|FK015042.1|FK015042
EST:     CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA                         A
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattaca-
EST: gi|298173457|gb|HO016793.1|HO016793
EST:     CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA                         AGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCG
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCG
EST: gi|254331914|gb|GR843657.1|GR843657
EST:     CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA                         AGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
EST: gi|208336506|gb|GE136786.1|GE136786
EST:     CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA                         AGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
EST: gi|254345762|gb|GR859409.1|GR859409
EST:     CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA                         AGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
EST: gi|192299870|gb|FG987828.1|FG987828
EST:     CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA                         AGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGCTGACGAAGCTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctttgttttctttgcattgaactatttttgtatgtgtgttactgtgtttatattttggcatgttagcgttatctaaagatgtggcactcttctcttattaca

- - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA