1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GACGCTGACGAAGCTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctttgttttctttgcattgaactatttttgtatgtgtgttactgtgtttatattttggcatgttagcgttatctaaagatgtggcactcttctcttattaca
species | Glycine max |
transcript | GLYMA18G47920.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGA-GAAATTTAA AGAGCTG-TGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGTEST: gi|298193158|gb|HO033592.1|HO033592
genomic: CAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
EST: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA AGAGCTGTTGCGAGAEST: gi|192325685|gb|FK015042.1|FK015042
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGA
EST: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA AEST: gi|192325685|gb|FK015042.1|FK015042
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattaca-
EST: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA AEST: gi|298173457|gb|HO016793.1|HO016793
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattaca-
EST: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA AGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGEST: gi|254331914|gb|GR843657.1|GR843657
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCG
EST: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA AGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGTEST: gi|208336506|gb|GE136786.1|GE136786
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
EST: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA AGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGTEST: gi|254345762|gb|GR859409.1|GR859409
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
EST: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA AGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGTEST: gi|192299870|gb|FG987828.1|FG987828
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
EST: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAA AGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
genomic: CTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctt ... tcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGCTGACGAAGCTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAagtaattctttgttttctttgcattgaactatttttgtatgtgtgttactgtgtttatattttggcatgttagcgttatctaaagatgtggcactcttctcttattaca
- - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA