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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACAGTGGGACAGGTCACTGAGGTTAACAAGGACACCTTCTGGCCGATCGTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatcttactatcttaggttatgtataatcatatgattatatgataggttatattattgttataaatgataatcatgtgctttttttttataataa...

Basic information

species Glycine max
transcript GLYMA18G47850.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47850.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G025954_T01 (Zea mays), 5'ss of exon 1
TCACAGTGGGACAGGTCACTGAGGTTAACAAGGACACCTTCTGGCCGATCGTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatcttactatcttaggttatgtata-----atcatatgattatatgataggttatattattgt-tat----aaatgataatcat-gtgcttttttt-ttataataa--------------------------------------------
 |      || |||||||| ||||| |||||||||||||||||||| |||||  |||| ||||| || ||   ||| ||||| |||||||||||  ||||||| |||  |     |   | || |||  |      | |  | |    |     || || ||  |   | |||    | | ||  |  |  || | | ||   ||  | ||                                             
CCGTCACCGGGCAGGTCACGGAGGTCAACAAGGACACCTTCTGGCCCATCGTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtacgtacgtacgcgtgcaaagtgatgcctcgatctagctcaagtcgttccaggagattgtagaaccatatatcctgagacgacgacgacagtacgtgttgcattgcagtacatactgatatactgcgcgcgttgtggtgtgtttgcatcatgcag

upper sequence: GLYMA18G47850.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G017419_T01 (Zea mays), 5'ss of exon 1
TCACAGTGGGACAGGTCACTGAGGTTAACAAGGACACCTTCTGGCCGATCGTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatcttactatct---taggttatgtataatcatatgattatatgataggttatattattgttataaatgataatcatgtgctttttttttataataa
 |      || |||||||| ||||| |||||||||||||||||||| |||||  |||| ||||| || ||   ||| ||||| |||||||||||  ||||||  |||   ||| || |   ||  || |   |  || |    |       ||    || ||| | |  | | |  |||||| |         |  |||    
CCGTCACCGGGCAGGTCACGGAGGTCAACAAGGACACCTTCTGGCCCATCGTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacactacaatatatatatcttcttcttcttcttccattcggtctttaacgaattttagtttacttactactaatcaagacacacaaatagatat---

upper sequence: GLYMA18G47850.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G16400.1 (Arabidopsis thaliana), 5'ss of exon 1
TCACAGTGGGACAGGTCACTGAGGTTAACAAGGACACCTTCTGGCCGATCGTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatcttactatcttaggttatgtataatcatatgattatatgataggttatattattgt-tataaatgataatcatgtgctttttttttataataa--
|||| || || ||||| || |||||| | |||||||| |||||||| || ||||| || ||||| ||||| |  |||||||| ||||||||||| || |||||   |  || | |||     || |   |  |  |  || | |  ||     |  |||    | | |   |   ||  |  || ||   |   ||  | |  
TCACTGTTGGCCAGGTGACGGAGGTTGATAAGGACACGTTCTGGCCAATTGTTAAAGCCGCCGGTGATAAGATTGTTGTCCTCGACATGTACACTCAGTGgta---acgtttcgatcacttcttcttcttcttggtgcgaattttggaattacttgattgcaatctcttgtttggaactacttgattccgtcgcatgttcaga

upper sequence: GLYMA18G47850.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g00740.t01 (Vitis vinifera), 5'ss of exon 1
TCACAGTGGGACAGGTCACTGAGGTTAACAAGGACACCTTCTGGCCGATCGTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatcttactatcttaggttatgtataatcatatgattatatgataggttatattattgttataaatgataatcatgtgctttttttttataataa--
     ||||||||||| || ||||| || |||||||| |||||||| || || ||||| |||||||| ||  |||| || || || |||||||| || |||||||| | |    ||      || | |    | | |   |    ||  ||  |  |||   ||| |   ||  | | || |  | |  |||  |  |    
CGGTCGTGGGACAGGTGACCGAGGTGAATAAGGACACATTCTGGCCTATAGTCAAGGCCGCCGGGGACAAGGCCGTCGTTCTCGATATGTACACTCAGTGgtatgtgtgt-gtgatgaatccttttttgctttgaaaatgtggagtggaagtgtgaattgaagttgttc-tggaagtgattttttctgatttggtgttttct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208206678|gb|GE005815.1|GE005815
EST:     GGGAT-AAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|208291436|gb|GE094602.1|GE094602
EST:     GCCGGGAATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|208315959|gb|GE117871.1|GE117871
EST:     GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|193573980|gb|FK529298.1|FK529298
EST:     GGGGATAAAACCGTTGTTCCTTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGAATGGCTCCAAAGTTTCAAGAATTATCTGAAA
genomic: GGGGATAAAACCGTTG-TCC-TTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTG-ATGGCTCCAAAGTTTCAAGAATTATCTGAAA
EST: gi|193449274|gb|FK412025.1|FK412025
EST:     CTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACGCAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: CTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|208235444|gb|GE029686.1|GE029686
EST:     GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|10233522|gb|BE802410.1|BE802410
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|22523063|gb|BU081874.1|BU081874
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|8669948|gb|BE191055.1|BE191055
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|15204667|gb|BI427435.1|BI427435
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|209718144|gb|BW657803.1|BW657803
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|193496027|gb|FK458607.1|FK458607
EST:     GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAGGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAGA
genomic: GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|208097036|gb|GD894689.1|GD894689
EST:     GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCCAAGTTTCAAGAATTATCTGAAAA
genomic: GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|207820793|gb|GD791790.1|GD791790
EST:     GCCGGGGATAAAACCGTTGTTCCTTGTACTATGTACACACAATG                         GTGTGGCCC-TGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GCCGGGGATAAAACCGTTG-TCCTTG-AC-ATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|208201450|gb|GE000014.1|GE000014
EST:     GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|193666151|gb|FK612210.1|FK612210
EST:     GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|15204672|gb|BI427440.1|BI427440
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|208110738|gb|GD910892.1|GD910892
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|208178337|gb|GD978290.1|GD978290
EST:     CTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: CTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|10844836|gb|BF068037.1|BF068037
EST:     GTTATGGCTGCCTGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|10231562|gb|BE800450.1|BE800450
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|20498028|gb|BQ272958.1|BQ272958
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|5760472|gb|AI965835.1|AI965835
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|20448963|gb|BQ253087.1|BQ253087
EST:     GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GTTAAGGCTGCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|193413845|gb|FK378276.1|FK378276
EST:     GCCGGGGATAAAACCGTTGTCCTCGACATGTACTACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAA
genomic: GCCGGGGATAAAACCGTTGTCCTTGACATGTAC-ACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAA
EST: gi|208076715|gb|GD875644.1|GD875644
EST:     GCCGGGGAT-AAACCGTTGTCCTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GCCGGGGATAAAACCGTTGTCCTTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
EST: gi|208247694|gb|GE045278.1|GE045278
EST:     GCCGGGGATAAAACCGTTGTTCCTTTGACATGTACACACAATG                         GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA
genomic: GCCGGGGATAAAACCGTTG-TCC-TTGACATGTACACACAATGgtatgtatct ... tctttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAA