1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...nnnnnnnnngatatcaaagtgaaagaaatcaaacagccccttatgtatgtcttcattgttttatgtagacattctgacgaatctcctcttcttttatgcaGCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTGTTTGTCCTCTGTGTTTGAGGAGTACCAACGATTTGCTGGTGCTAAATCC
species | Glycine max |
transcript | GLYMA18G47720.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA GCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTGEST: gi|9565076|gb|BE474585.1|BE474585
genomic: GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAAggtatagaat ... cttttatgcaGCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTG
EST: GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA GCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTGEST: gi|192334344|gb|FK024415.1|FK024415
genomic: GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAAggtatagaat ... cttttatgcaGCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTG
EST: GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA GCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTGEST: gi|192334345|gb|FK024416.1|FK024416
genomic: GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAAggtatagaat ... cttttatgcaGCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTG
EST: GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA GCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTGEST: gi|213615018|gb|DB957056.1|DB957056
genomic: GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAAggtatagaat ... cttttatgcaGCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTG
EST: GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA GCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTG
genomic: GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAAggtatagaat ... cttttatgcaGCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTG
tatgtcttcattgttttatgtagacattctgacgaatctcctcttcttttatgcaGCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTGTTTGTCCTCTGTGTTTGAGGAGTACCAACGATTTGCTGGTGCTAAATCC
ttctgac putative branch site (score: 2)
tctcctcttcttttat putative PPT
attgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| nnnnnnnnngatatcaaagtgaaagaaatcaaacagccccttatgtatgtcttcattgttttatgtagacattctgacgaatctcctcttcttttatgcaGCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTGTTTGTCCTCTGTGTTTGAGGAGTACCAACGATTTGCTGGTGCTAAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - -cagcccc
- - - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - cttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac