1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataatgtgtctcgtaatgtgggttttccgcagattatgttgtgtgtgtgtgtgtgtgtgtgtgtgttttaatgtttatgcgaggttgcgaattcgtgcagATACCTGTGCCCCGAGCCTTATCCGGAAGGAAATCTCGAGTTCCTCCGCTCGCAGAATATTCGCCTCTTTCAATTTGGAATTGAGGGGAAAAC
species | Glycine max |
transcript | GLYMA18G47720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCCCTTCCAATTTCCCCTTTCTCCAAACCCTAAACCTTCGCTCCATCAT ATACCTGTGCCCCGAGCCTTATCCGGAAGGAAATCTCGAGTTCCTCCGCTCEST: gi|192334345|gb|FK024416.1|FK024416
genomic: ACCCCTTCCAATTTCCCCTTTCTCCAAACCCTAAACCTTCGCTCCATCATgttagctcct ... attcgtgcagATACCTGTGCCCCGAGCCTTATCCGGAAGGAAATCTCGAGTTCCTCCGCTC
EST: ACCCCTTCCAATTTCCCCTTTCTCCAAACCCTAAACCTTCGCTCCATCAT ATACCTGTGCCCCGAGCCTTATCCGGAAGGAAATCTCGAGTTCCTCCGCTCEST: gi|213615018|gb|DB957056.1|DB957056
genomic: ACCCCTTCCAATTTCCCCTTTCTCCAAACCCTAAACCTTCGCTCCATCATgttagctcct ... attcgtgcagATACCTGTGCCCCGAGCCTTATCCGGAAGGAAATCTCGAGTTCCTCCGCTC
EST: ACCCCTTCCAATTTCCCCTTTCTCCAAACCCTAAACCTTCGCTCCATCAT ATACCTGTGCCCCGAGCCTTATCCGGAAGAAAATCTCGAGTTCCTCCGCTC
genomic: ACCCCTTCCAATTTCCCCTTTCTCCAAACCCTAAACCTTCGCTCCATCATgttagctcct ... attcgtgcagATACCTGTGCCCCGAGCCTTATCCGGAAGGAAATCTCGAGTTCCTCCGCTC
tgtgtgtgtgtgtgtgtgtgttttaatgtttatgcgaggttgcgaattcgtgcagATACCTGTGCCCCGAGCCTTATCCGGAAGGAAATCTCGAGTTCCTCCGCTCGCAGAATATTCGCCTCTTTCAATTTGGAATTGAGGGGAAAAC
ttttaat putative branch site (score: 3)
tgttttaatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatgtgtctcgtaatgtgggttttccgcagattatgttgtgtgtgtgtgtgtgtgtgtgtgtgttttaatgtttatgcgaggttgcgaattcgtgcagATACCTGTGCCCCGAGCCTTATCCGGAAGGAAATCTCGAGTTCCTCCGCTCGCAGAATATTCGCCTCTTTCAATTTGGAATTGAGGGGAAAAC
- - -gtgtctc
- - - - - - - - tgtgggt
- - - - - - - - - - - - - - - - - - - - gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggttgc