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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtactgaatcattgcaatgattttttttttttttgtttgtgtgtatatccctggtgctgctgcatcatcacttgtttattgggtatttaagttctttcattttttgtggtttcaGATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA

Basic information

species Glycine max
transcript GLYMA18G47720.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925733|gb|AW831759.1|AW831759
EST:     AAGTTTTAATT                         GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA
genomic: AAGTTTTAATTggtactgaat ... tgtggtttcaGATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA
EST: gi|9565076|gb|BE474585.1|BE474585
EST:     CTATGCCTGTTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTAATT                         GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA
genomic: CTATGCCTGTTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTAATTggtactgaat ... tgtggtttcaGATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA
EST: gi|192334344|gb|FK024415.1|FK024415
EST:     CTATACCTGTTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTAATT                         GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA
genomic: CTATGCCTGTTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTAATTggtactgaat ... tgtggtttcaGATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA
EST: gi|192334345|gb|FK024416.1|FK024416
EST:     CTATACCTGTTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTAATT                         GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA
genomic: CTATGCCTGTTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTAATTggtactgaat ... tgtggtttcaGATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA
EST: gi|213615018|gb|DB957056.1|DB957056
EST:     CTATGCCTGTTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTAATT                         GATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA
genomic: CTATGCCTGTTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTAATTggtactgaat ... tgtggtttcaGATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcatcatcacttgtttattgggtatttaagttctttcattttttgtggtttcaGATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAA
                                ttctttcattttttgt  CT-rich tract
                        tatttaagttctttca  TA-rich tract