1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aacgcttctccatgtccttttattgtttatcacataatgcaatcatctctaaactattatgtttataactgttactgttattttttgttttgctgtggcaGTTTGCATCTGGGAGCCTTGATGGTCCTATCAGATATTAGAACAGTACTGCAATTTTAAACTAGATAACATATGGATTATGGCTGGTCTTGGCTACTTCC
species | Glycine max |
transcript | GLYMA18G47600.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAATGACTCATGAATTTACAACTTCAACTAATCCAATTGTCCAGCA GTTTGCATCTGGGAGCCTTGATGGTCCTATCAGATATTAGAACAGTACTGCEST: gi|17400876|gb|BM177658.1|BM177658
genomic: GAAGGAATGACTCATGAATTTACAACTTCAACTAATCCAATTGTCCAGCAggttagttgt ... tgctgtggcaGTTTGCATCTGGGAGCCTTGATGGTCCTATCAGATATTAGAACAGTACTGC
EST: GAAGGAATGACTCATGAATTTACAACTTCAACTAATCCAATTGTCCAGCA GTTTGCATCTGGGAGCCTTGATGGTCCTATCAGATATTAGAACAGTACTGC
genomic: GAAGGAATGACTCATGAATTTACAACTTCAACTAATCCAATTGTCCAGCAggttagttgt ... tgctgtggcaGTTTGCATCTGGGAGCCTTGATGGTCCTATCAGATATTAGAACAGTACTGC
tctctaaactattatgtttataactgttactgttattttttgttttgctgtggcaGTTTGCATCTGGGAGCCTTGATGGTCCTATCAGATATTAGAACAGTACTGCAATTTTAAACTAGATAACATATGGATTATGGCTGGTCTTGGCTACTTCC
ttataac putative branch site (score: 2)
ttattttttgtttt putative PPT
aaactattatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacgcttctccatgtccttttattgtttatcacataatgcaatcatctctaaactattatgtttataactgttactgttattttttgttttgctgtggcaGTTTGCATCTGGGAGCCTTGATGGTCCTATCAGATATTAGAACAGTACTGCAATTTTAAACTAGATAACATATGGATTATGGCTGGTCTTGGCTACTTCC
- - cttctcc
- - - - - - - - - - - - - - - - - - -tgcaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttactg