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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCACATAAAAGGACAAGATGCACGTGGAAAACCTGGGAATATTTCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAggtaagaatattttcataatgattgcatgtcttcctgtcccctgaagcctcttaatttgcccagaattcatgtgtcctgatatgcaaagttacttcataaataca

Basic information

species Glycine max
transcript GLYMA18G47600.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47600.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGCACATAAAAGGACAAGATGCACGTGGAAAACCTGGGAATATTTCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAggtaagaatatt--ttcataatgattgcatgtcttcctgtcccctgaagcctcttaatttgcccagaattcatgtgtcctgatatgcaaagttacttcataaataca
 | ||||| | ||   ||||||||  |||||||||||| || ||| | |||||| | |||||||| || |||||||| |||||| |||||||  | || ||||     |  |  | |||| | |    ||   ||  || |  ||   || || |   |||   |  |||  | | | ||  |  |                     
-TTCACATGACAGACGAAGATGCAGTTGGAAAACCTGGAAAAATTGCGTCTTATCTTGTTGTTACCCATCAACATAGCACCATTCAAAGAGCTGTAGACAGgttccgcttctagtccatatt-acaagatacgtttttg-cagcttttgcttcatcccttgagtaatatttgtttcttctattcag---------------------

upper sequence: GLYMA18G47600.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g00290.t01 (Vitis vinifera), 5'ss of exon 8
GTGCACATAAAAGGACAAGATGCACGTGGAAAACCTGGGAATATTTCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAggtaagaatattttcataatgattgcatgtct-----tcctgtcccctga-agcctcttaatttgcccagaattcatgtgtcctgatatgcaaagttacttcataaataca-
 | ||  ||||||   ||||||||| ||| || | |||||| ||| |||| ||||| ||||| ||||| |||||||||||||||| ||||||| |||| |||||    |   | || |     ||||| |||     | |    |  ||  ||    |||  | ||   |   | |  | |||| |  || |  |  | |      ||| | 
-TCCATTTAAAAGAGGAAGATGCACCTGGGAAGCTTGGGAAGATTGCATCATATGTAGTTGTCACTCATCAACATAGTACCATTAGAAGAGCCGTTGACAGgtagtgcttcatacaaatgagatgcatttctgaaagtacaaggctttgtcaggaatttatgtggctttgttctgacatatcctaaactg-attgccattgttattatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204793|gb|BI427561.1|BI427561
EST:     TTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATA                         GATTGTTGTTTCTACACAAGGGAAAGATTGTTTGGGAAGGAATGACTCATG
genomic: TTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAggtaagaata ... cataaatacaGATTGTTGTTTCTACACAAGGGAAAGATTGTTTGGGAAGGAATGACTCATG
EST: gi|17400876|gb|BM177658.1|BM177658
EST:     TTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATA                         GATTGTTGTTTCTACACAAGGGAAAGATTGTTTGGGAAGGAATGACTCATG
genomic: TTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAggtaagaata ... cataaatacaGATTGTTGTTTCTACACAAGGGAAAGATTGTTTGGGAAGGAATGACTCATG