1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actttaatccaaacatgcactgatttgggattttgggtatgtgattttaatttcgaacaactgagttcacttcttgaatgttgttgttgtcaaattgacaGGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGATGACATATCTGGTCTTCGGATTGGATT
species | Glycine max |
transcript | GLYMA18G47600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTTGCTCCGGACAA GGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGAEST: gi|23064498|gb|BU579271.1|BU579271
genomic: GGCAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTTGCTCCGGACAAggtaaacata ... caaattgacaGGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGA
EST: GGCAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTTGCTCCGGACAA GGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGAEST: gi|17023590|gb|BM094624.1|BM094624
genomic: GGCAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTTGCTCCGGACAAggtaaacata ... caaattgacaGGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGA
EST: GGCAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTTGCTCCGGACAA GGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGA
genomic: GGCAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTTGCTCCGGACAAggtaaacata ... caaattgacaGGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGA
tttaatttcgaacaactgagttcacttcttgaatgttgttgttgtcaaattgacaGGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGATGACATATCTGGTCTTCGGATTGGATT
ttttaat putative branch site (score: 3)
tcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttaatccaaacatgcactgatttgggattttgggtatgtgattttaatttcgaacaactgagttcacttcttgaatgttgttgttgtcaaattgacaGGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGATGACATATCTGGTCTTCGGATTGGATT
- - - - ccaaaca
- - - - - - - -tgcactg
- - - - - - - - - - - - - - - - - - gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg