1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtgtttgtgtgacaaaatcacaaaataaataatttatgtaaataaaatgtgtggtggattaaagagttgggatttatttgaattggttaatgtcccaggCAAAAAAATGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTCCAGAATGTCAATTCACTGTGTGAAAAACTGCCATTGATGGGGATTGACA
species | Glycine max |
transcript | GLYMA18G47580.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAG-CATCTTAAAGTTGATCCAACAAATTGTATTTTCGTAGATGACAAG CNNNNNNNTGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGG-TACATTTTEST: gi|151412587|gb|EV282399.1|EV282399
genomic: TCAGGCATCTTAAAGTTGATCCAACAAATTGTATTTTCGTAGATGACAGGttcctactct ... atgtcccaggCAAAAAAATGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTC
EST: TCAGGCATCTTAAAGTTGATCCAACAAATTGTATTTTCGTAGATGACAGG CNNNNNNNTGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTC
genomic: TCAGGCATCTTAAAGTTGATCCAACAAATTGTATTTTCGTAGATGACAGGttcctactct ... atgtcccaggCAAAAAAATGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTC
aaatgtgtggtggattaaagagttgggatttatttgaattggttaatgtcccaggCAAAAAAATGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTCCAGAATGTCAATTCACTGTGTGAAAAACTGCCATTGATGGGGATTGACA
ggttaat putative branch site (score: 4)
atttatttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtttgtgtgacaaaatcacaaaataaataatttatgtaaataaaatgtgtggtggattaaagagttgggatttatttgaattggttaatgtcccaggCAAAAAAATGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTCCAGAATGTCAATTCACTGTGTGAAAAACTGCCATTGATGGGGATTGACA
- - - tgtgtga
- - - - - - -caaaatc
- - - - - - - - - - - aaaataa
- - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tggtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggga