1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actcctaaagtaggccaaacctatcattcttgtgctccaagcccccgttgattttgataaagctactgatttgcatgtgtgtttccaatttacggacaggCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAGTTGCTTCTTTCCTTAAAGCTAAATAACTATGAGATGCATGCTTTTACA
species | Glycine max |
transcript | GLYMA18G47580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGG CCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAEST: gi|151411561|gb|EV281372.1|EV281372
genomic: GAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGGttggttggtc ... tacggacaggCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACA
EST: GAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGG CCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAEST: gi|151412587|gb|EV282399.1|EV282399
genomic: GAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGGttggttggtc ... tacggacaggCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACA
EST: GAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGG CCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAEST: gi|151400066|gb|EV269880.1|EV269880
genomic: GAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGGttggttggtc ... tacggacaggCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACA
EST: GAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGG CCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACA
genomic: GAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTAGAAGGttggttggtc ... tacggacaggCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACA
cgttgattttgataaagctactgatttgcatgtgtgtttccaatttacggacaggCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAGTTGCTTCTTTCCTTAAAGCTAAATAACTATGAGATGCATGCTTTTACA
tactgat putative branch site (score: 2)
attttgataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcctaaagtaggccaaacctatcattcttgtgctccaagcccccgttgattttgataaagctactgatttgcatgtgtgtttccaatttacggacaggCCTTAAAACTTGTATGAGAAGTGGATATTCATACATAGAAGGCATCGAACAGTTGCTTCTTTCCTTAAAGCTAAATAACTATGAGATGCATGCTTTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - ccaaacc
- - - - - - - - - - - - - - - - tgctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttcc