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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taagacagttatttttctattgtgatttgtgtttttcttttcatggcatcctactgaatgttttgtattgtaggTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACGTTTTGTTCGTGGGCTTTTGG

Basic information

species Glycine max
transcript GLYMA18G47580.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47580.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g19460.2 (Oryza sativa), 3'ss of exon 4
taagacagttatttttctattgtgatttgtgtttttcttttcatggcatcctactgaatgttttgtattgtaggTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACGTTTTGTTCGTGGGCTTTTGG
   |      | || |||      ||||||     | |  |  |    |  | |   |  | | ||  ||||||||||||||  |||| || |||||||| || ||||| |||||||| ||||| || ||||| ||  |  ||| 
gtgggtttcaacttatcttgacacatttgtacacatgtgcttgttcggttgttcctgaaatat-gttctgtagGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408478|gb|EV278286.1|EV278286
EST:     TAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGG                         TACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACG
genomic: TAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGtaagacagtt ... gtattgtaggTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACG
EST: gi|151411561|gb|EV281372.1|EV281372
EST:     TAAAGCCAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGG                         TACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACG
genomic: TAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGtaagacagtt ... gtattgtaggTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACG
EST: gi|151412587|gb|EV282399.1|EV282399
EST:     TAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGG                         TACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACG
genomic: TAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGtaagacagtt ... gtattgtaggTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACG
EST: gi|151400066|gb|EV269880.1|EV269880
EST:     TAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGG                         TACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACG
genomic: TAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGtaagacagtt ... gtattgtaggTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgatttgtgtttttcttttcatggcatcctactgaatgttttgtattgtaggTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTGTCGTGGACGTTTTGTTCGTGGGCTTTTGG
            tttttctttt  TA-rich tract