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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tttatcttttttacattagatcgtaataccatatcattgccatcactagatttcttgaaaatacttgccctcctctcactttttgtgtggctacagaTGCATATCAGAAGGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGTCCTGAAGCTATGGAAGGAATGAGAGGACTTCCCAAGTTTGTACTTTGTAA

Basic information

species Glycine max
transcript GLYMA18G47570.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193433107|gb|FK395759.1|FK395759
EST:     TCTGTTTACATTGCTGTTATAATTGACTGCATCAGAATCAGTTATCAGA                         TGCATATCAGAAGGGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGT
genomic: TCTGTTTACATTGCTGTTATAATTGACTGCATCAGAATCAGTTATCAGGtttatctttt ... tggctacagaTGCATATCAGAA-GGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGT
EST: gi|192313525|gb|FK004135.1|FK004135
EST:     ATCTGTTTACATTGCTGTTATAATTGACTGCATCAGAATCAGTTATCAGA                         TGCATATCAGAAGGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGTC
genomic: ATCTGTTTACATTGCTGTTATAATTGACTGCATCAGAATCAGTTATCAGGtttatctttt ... tggctacagaTGCATATCAGAAGGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGTC
EST: gi|207768741|gb|GD740552.1|GD740552
EST:     ATCTGTTTACATTGCTGTTATAATTGACTGCATCAGAATCAGTTATCAGA                         TGCATATCAGAAGGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGTC
genomic: ATCTGTTTACATTGCTGTTATAATTGACTGCATCAGAATCAGTTATCAGGtttatctttt ... tggctacagaTGCATATCAGAAGGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactagatttcttgaaaatacttgccctcctctcactttttgtgtggctacagaTGCATATCAGAAGGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGTCCTGAAGCTATGGAAGGAATGAGAGGACTTCCCAAGTTTGTACTTTGTAA
                              ctctcac  putative branch site (score: 3)
                         ccctcctctcactttt  CT-rich tract
       atttcttgaaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttatcttttttacattagatcgtaataccatatcattgccatcactagatttcttgaaaatacttgccctcctctcactttttgtgtggctacagaTGCATATCAGAAGGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGTCCTGAAGCTATGGAAGGAATGAGAGGACTTCCCAAGTTTGTACTTTGTAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA