Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGTCTCTTCGACCCTCTTCTCCTCTTGTTCTGACCCACAACCTCCACTTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgctacccctcttttttctttcatgggttttcatttaaacacgctaaagttttaatctttatggttcccatatgaattgcatgcttcaactttt...

Basic information

species Glycine max
transcript GLYMA18G47570.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298188118|gb|HO032075.1|HO032075
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298181870|gb|HO026045.1|HO026045
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298164526|gb|HO014171.1|HO014171
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|17400251|gb|BM177042.1|BM177042
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298174536|gb|HO017759.1|HO017759
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTTTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298198656|gb|HO042019.1|HO042019
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|7795763|gb|AW781160.1|AW781160
EST:     TTCCAACCCAAACTCAAACGCGCTTNCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298196614|gb|HO041357.1|HO041357
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298180172|gb|HO025387.1|HO025387
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAGATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298179326|gb|HO027797.1|HO027797
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298174144|gb|HO017480.1|HO017480
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298199387|gb|HO042750.1|HO042750
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|192298524|gb|FG988495.1|FG988495
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|9986347|gb|BE660455.1|BE660455
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|213587342|gb|DB957613.1|DB957613
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298176649|gb|HO026770.1|HO026770
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGGAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|207843417|gb|GD814806.1|GD814806
EST:     CAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCGAATAA
genomic: CAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298175417|gb|HO015050.1|HO015050
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298187414|gb|HO034563.1|HO034563
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298181516|gb|HO022955.1|HO022955
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|192328700|gb|FK022514.1|FK022514
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|17401333|gb|BM178115.1|BM178115
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|193344985|gb|FK311611.1|FK311611
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|22540010|gb|BU089853.1|BU089853
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298199561|gb|HO042924.1|HO042924
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|8670369|gb|BE191476.1|BE191476
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298197503|gb|HO044982.1|HO044982
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|4295878|gb|AI442395.1|AI442395
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|298199341|gb|HO042704.1|HO042704
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
EST: gi|13481659|gb|BG511002.1|BG511002
EST:     TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGC                         GTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA
genomic: TTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgct ... ttgtttcagcGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACTGTCTCTTCGACCCTCTTCTCCTCTTGTTCTGACCCACAACCTCCACTTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGGtactactgctacccctcttttttctttcatgggttttcatttaaacacgctaaagttttaatctttatggttcccatatgaattgcatgcttcaactttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacccc