Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGttagcactattaccatttctttttgcatatgccttttaaatttaatgtctaccatattgaaagatctctcgattattcttctttttagtattatcgccaa...

Basic information

species Glycine max
transcript GLYMA18G47140.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47140.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g38950.1 (Oryza sativa), 5'ss of exon 3
-GATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGttagcactattaccatttctttttgcatatgcctttt---------aaattta----atgtctaccatattgaaagatctctcgattattct---tctttttagtattatcgccaa----------------------------------------------------------------
 || ||||| |||||||| |||||||||| |||||| |||||||||||||| ||||| || || || || ||||||| |||||||||||| || || | |||| |     |     ||    |||||  |  | ||||         |||| ||      |  | ||||       | ||  | | |   | |   | || ||  |  ||||   |                                                                 
AGACAACTTTAATGATGTTTACATTGTTTCTGAGTTGATGGATACTGATCTCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAGgtttgttgcttccagcttgtgctttgctgaaacattttgcttgcagaaaatctagacagagatttccatgcaccttgttcctttggtcgctatatgttttcttcatcctatccatatttcagcttaacattctcttgtttatctggtttaataatcacaagtgacatgttttgcattgcag

upper sequence: GLYMA18G47140.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g06060.1 (Oryza sativa), 5'ss of exon 3
-GATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGt-tagcactattaccatttctttttgcat---atgccttttaaatttaatgtctaccatattgaaagatctctcgattattcttctttttagtattatcgccaa------------------------
 || |||||||||||||| |||||||| |||||| | ||||| |||||||| || ||  |  ||||||| || || | | | || |||||||| |||| ||| |  | |||||    ||| ||| || ||   |     | |   ||     || |    ||| ||  |       | | |   | || |    ||| |  |  |                        
GGAGAACTTCAATGATGTCTACATTGTCTATGAGCTCATGGACACTGATCTTCACCACCTTCTTCGATCAAACCAGCCACTAACAGATGATCACTGTCAGgtctcactctattcttgtttgtttctgtattaaaccatctcttcgttatccatcaattcaattcaagcactaaataactgtaagttttctctccattctaacacatccccttcttttttttttttgcag

upper sequence: GLYMA18G47140.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G127141_T01 (Zea mays), 5'ss of exon 3
-GATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGttagcactattaccatttctttttgcatatgccttttaaatttaatgtctacc---atattgaaagatctctcgattattcttctttttagtatt-atcgccaa
 || ||||| ||||| ||||||||||||  ||||||||||||||| ||||| ||||| ||  | || || ||||| | |||||||||||||||||| | |||  |       | | | |      |  ||||   |   ||    || | || |    |||| ||  |  |   | || | |    ||     ||| ||      
AGAGAACTTTAATGACGTGTACATTGTTACTGAGTTAATGGATACAGATCTCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgctccagcttgtgccaaagt-tatgttataccaaacagatttttatccaactattcaagtaaatgatgtttgtgcccaattcagaaattgatta----

upper sequence: GLYMA18G47140.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G01370.1 (Arabidopsis thaliana), 5'ss of exon 3
-GATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGttagcactattaccatttctttttgcatatgccttttaaatttaatgtctaccatattgaaagatctctcgat-tatt----cttctttttagtatta-tcgccaa----------------------------------------------------------------------------------
 || |||||||||||||| ||||||||||||||| | ||||| |||||||| || ||||| ||||| || || ||||  || ||||||||||||||||||||  |||  | |  |  |  |  ||  || |  |   | ||| |  ||| |    | | |||  | || |   | | ||    | |||  | ||||||  | |  |                                                                                   
AGAGAACTTCAATGATGTTTACATTGTTTATGAGCTTATGGACACTGATCTCCACCAAATTATTCGCTCTAACCAACCCTTAACTGATGATCATTGTCGGgtatgcatcaatctccatcttgcttatatctagcagctgaatcttctgtttctactttagaagcagctgttattgtgttagagcatctgatgagtattgcttgatactttataagtgagagctaataaggatttcgtttgttatgctttgaagttgtgtttagtaattagtttcgattatgttttgcag

upper sequence: GLYMA18G47140.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G01560.1 (Arabidopsis thaliana), 5'ss of exon 3
-GATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGttagcactattaccatttctttttgcatatgccttttaaatttaatgtctaccatattgaaagatctctcgattattcttctttttagtattatcgccaa---------------------------------------------
 || ||||||||||||||  ||||||| |||||||||||||| |||||||| || || || || || || || ||||  || |||||||||||||  |||||  ||| ||  |||  | ||       |    ||| ||  |  | | ||| |  | | |    |  | |  | |     ||||||| ||   |  || |                                              
AGACAACTTCAATGATGTTCACATTGTCTATGAGTTAATGGACACTGATCTTCACCACATTATCCGCTCTAACCAACCGTTAACTGATGATCATTCACGGgtacgcatta--acctctcct------gtgcttcttatagctcaagtatcttctgtttaggtcaaagtttataatcagaatctttttggttcgaaggctatgaagttggggtttgatgtataaccataaattttatgtttttgcag

upper sequence: GLYMA18G47140.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G46070.2 (Arabidopsis thaliana), 5'ss of exon 3
-GATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGttagc---------actattaccatttctttttgcatatgccttttaaatttaatgtctaccatattgaaagatctctcgattattcttctttttagtattatcgccaa
 |||| |||||||||||| |||||||| |||||||||||||| |||||||| || | |||  | || || || |||  | ||||   |||||| || || || ||            | | | ||||| |     |||    || |   |||| || | ||   |||| |    |||  |  |||                         
AGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCCTCCGTTCTAACCAAACACTGACCAGTGATCAATGCCGTgtaagtctctgtgttgttctaatcatttgtaaagtcatggaactctctgatttgatctttattctatttacttgtcttcctgttacag----------------------

upper sequence: GLYMA18G47140.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0046g02010.t01 (Vitis vinifera), 5'ss of exon 3
-GATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGtt-agcactattaccatttctttttgcatatgccttttaaatttaatgtctaccatattgaaagatctctcgattattctt-ctttttagtattatcgccaa
 || |||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| || ||||| |||| | ||| |||||| || || ||||||  |||| |  | | ||| ||   |||  |    | ||   ||       | ||  |||||   ||  | | | ||  || || |||      || |||  
GGAGAACTTCAATGATGTCTACATTGTTTATGAATTAATGGACACTGATCTGCATCAGATAATACGTTCCAACCAACCACTGAATGATGACCACTGCCGGgtttggcaccacaaacttttattggagcactttatctatatcattgcaacaaatcactttgaattgtca-ttgctcatgtttactatttcagcccattgcc--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254335273|gb|GR846770.1|GR846770
EST:     ATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGT                         ATTTTCTTTATCAGTTGCTACGAGGACTCAAATATGTACACTCAGCAAATG
genomic: ATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGttagcactat ... attttccagtATTTTCTTTATCAGTTGCTACGAGGACTCAAATATGTACACTCAGCAAATG
EST: gi|151406082|gb|EV275897.1|EV275897
EST:     GCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGT                         ATTTTCTTTATCAGTTGCTACGAGGACTCAAATATGTACACTCAGCAAATG
genomic: GCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGttagcactat ... attttccagtATTTTCTTTATCAGTTGCTACGAGGACTCAAATATGTACACTCAGCAAATG