1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaatttggtgtgttaggcaatgacctatactcattaatatggttttagttctgttatcaacaatgtgagggacaatgttgttttttcattttctttcagtGCTGCTGTAAATGCAGAGACACGTGAAGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACTCTACGAGAAATTA
species | Glycine max |
transcript | GLYMA18G47140.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCCTCCTATTCGCCCTGTGGGAAGAGGAGCATATGGTATTGTTTGT GCTGCTGTAAATGCAGAGACACGTGAAGAAGTTGCCATTAAGAAGGTTGGCEST: gi|151406082|gb|EV275897.1|EV275897
genomic: ATGTTCCTCCTATTCGCCCTGTGGGAAGAGGAGCATATGGTATTGTTTGGtaaggaagaa ... ttctttcagtGCTGCTGTAAATGCAGAGACACGTGAAGAAGTTGCCATTAAGAAGGTTGGC
EST: ATGTTCCTCCTATTCGCCCTGTGGGAAGAGGAGCATATGGTATTGTTTGT GCTGCTGTAAATGCAGAGACACGTGAAGAAGTTGCCATTAAGAAGGTTGGC
genomic: ATGTTCCTCCTATTCGCCCTGTGGGAAGAGGAGCATATGGTATTGTTTGGtaaggaagaa ... ttctttcagtGCTGCTGTAAATGCAGAGACACGTGAAGAAGTTGCCATTAAGAAGGTTGGC
tagttctgttatcaacaatgtgagggacaatgttgttttttcattttctttcagtGCTGCTGTAAATGCAGAGACACGTGAAGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACTCTACGAGAAATTA
tgttgttttttcattt CT-rich tract
ttttttcattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatttggtgtgttaggcaatgacctatactcattaatatggttttagttctgttatcaacaatgtgagggacaatgttgttttttcattttctttcagtGCTGCTGTAAATGCAGAGACACGTGAAGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACTCTACGAGAAATTA
- - -tggtgtg
- - - - - - - - -caatgac
- - - - - - - - - - - - - - - - - - - - - - - - ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaggg