1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ggtcagtatttcatgatcaacttcagattcttcaaatatagaacaatggatagcaagcatttgatacaatgtaaccaaagaataaaagtttgatttgaattgctaatatttgctctacctatgtttctttcttttatctttttctcaacaGATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGATGACTGTGTGGCGGTTAAGAGTGGATGGGATGAGTATGGCATAAAATTTG
species | Glycine max |
transcript | GLYMA18G47130.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCACCATTTATGCTCCTGTCACATCTCTAAACACTGATTGCATCAACCCA GATTCTTGCACAAATGTAAGAATTGGAGATTGCTATATAGTTTCTGGGGATEST: gi|7639619|gb|AW733938.1|AW733938
genomic: TCACCATTTATGCTCCTGTCACATCTCCAAACACTGATGGCATCAACCCAggtcagtatt ... tttctcaacaGATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGAT
EST: TCACCATTTATGCTCCTGTCACATCTCCAAACACTGATGGCATCAACCCA GATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGATEST: gi|9902791|gb|BE611759.1|BE611759
genomic: TCACCATTTATGCTCCTGTCACATCTCCAAACACTGATGGCATCAACCCAggtcagtatt ... tttctcaacaGATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGAT
EST: TCACCATTTATGCTCCTGTCACATCTCCAAACACTGATGGCATCAACCCA GATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGATEST: gi|208312509|gb|GE113805.1|GE113805
genomic: TCACCATTTATGCTCCTGTCACATCTCCAAACACTGATGGCATCAACCCAggtcagtatt ... tttctcaacaGATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGAT
EST: TCACCATTTATGCTCCTGTCACATCTCCAAACACTGATGGCATCAACCCA GATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGAT
genomic: TCACCATTTATGCTCCTGTCACATCTCCAAACACTGATGGCATCAACCCAggtcagtatt ... tttctcaacaGATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGAT
tgaattgctaatatttgctctacctatgtttctttcttttatctttttctcaacaGATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGATGACTGTGTGGCGGTTAAGAGTGGATGGGATGAGTATGGCATAAAATTTG
tgctaat putative branch site (score: 2)
tttgctctacctatgt CT-rich tract
tttcttttatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcagtatttcatgatcaacttcagattcttcaaatatagaacaatggatagcaagcatttgatacaatgtaaccaaagaataaaagtttgatttgaattgctaatatttgctctacctatgtttctttcttttatctttttctcaacaGATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGATGACTGTGTGGCGGTTAAGAGTGGATGGGATGAGTATGGCATAAAATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA