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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtaatcccacttcacttgtattcaagtcttataaaaaaatgtcattagatatactgatatagctactttactctcttattgtctttgaatattataataacaaatgatttgatactatgcaGCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCCAAACACTGATGGCATCAACCCA

Basic information

species Glycine max
transcript GLYMA18G47130.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38193059|gb|CF922265.1|CF922265
EST:     TCTAACTCTACTCAATTCCCCATCATGGAATGTTCATCCAGTTTACAGCA                         GCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCTAA
genomic: TCTAACTCTACTCAATTCCCCATCATGGAATGTTCATCCAGTTTACAGCAggtaatccca ... atactatgcaGCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCCAA
EST: gi|7639619|gb|AW733938.1|AW733938
EST:     TCTAACTCTACTCAATTCCCCATCATGGAATGTTCATCCAGTTTACAGCA                         GCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCCAA
genomic: TCTAACTCTACTCAATTCCCCATCATGGAATGTTCATCCAGTTTACAGCAggtaatccca ... atactatgcaGCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCCAA
EST: gi|9902791|gb|BE611759.1|BE611759
EST:     TCTAACTCTACTCAATTCCCCATCATGGAATGTTCATCCAGTTTACAGCA                         GCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCCAA
genomic: TCTAACTCTACTCAATTCCCCATCATGGAATGTTCATCCAGTTTACAGCAggtaatccca ... atactatgcaGCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCCAA
EST: gi|208312509|gb|GE113805.1|GE113805
EST:     TCTAACTCTACTCAATTCCCCATCATGGAATGTTCATCCAGTTTACAGCA                         GCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCCAA
genomic: TCTAACTCTACTCAATTCCCCATCATGGAATGTTCATCCAGTTTACAGCAggtaatccca ... atactatgcaGCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactctcttattgtctttgaatattataataacaaatgatttgatactatgcaGCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCCAAACACTGATGGCATCAACCCA
         ttattgtctttgaata  TA-rich tract